SCN Proteipedia

Hg_chrom1_TN10mRNA_1529

Organism: Heterodera glycines Gene Locus: chr1:14625664-14629846 Feature type: polypeptide

Protein Sequence

Length: 666

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.733	0.873	1.037	0.984	1.577	1.271	0.358	1.877	1.335	1.725	0.978	1.413	1.21	0.895	1.073	1.137	0.665	0.569	0.578	0.53	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1465	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRRP,KKESEGDDKEEQKKEKRG	—	—	—	—	—	—	0.000	—	—	0.642	0.158	0.007	0.582	0.145	0.171	0.138	0.045	0.136	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003071	2.000	1.000	Hsc_gene_2403.t1	Hsc_gene_2403.t1	—	Q9Y113.1 Negative elongation factor B [Drosophila melanogaster]	KAI1719574.1 cofactor of BRCA1 (COBRA1) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005634\|GO:0045892	GO:0008150_0.958\|GO:0005575_0.929\|GO:0110165_0.927\|GO:0009987_0.922\|GO:0005622_0.889\|GO:0065007_0.881\|GO:0050789_0.873\|GO:0016020_0.868\|GO:0050794_0.847\|GO:0043226_0.845\|GO:0043229_0.817\|GO:0043227_0.781\|GO:0008152_0.775\|GO:0043170_0.775\|GO:0044238_0.769\|GO:0009058_0.760\|GO:0043231_0.760\|GO:0044237_0.759\|GO:0044249_0.753\|GO:0048519_0.752\|GO:0019222_0.751\|GO:0009059_0.750\|GO:0048523_0.743\|GO:0010467_0.741\|GO:0031323_0.736\|GO:0006139_0.733\|GO:0060255_0.730\|GO:0080090_0.729\|GO:0090304_0.720\|GO:0009889_0.716\|GO:0031326_0.716\|GO:0034654_0.716\|GO:0016070_0.715\|GO:0141187_0.714\|GO:0010468_0.713\|GO:0010556_0.713\|GO:0032774_0.708\|GO:0009892_0.700\|GO:0019219_0.697\|GO:0031324_0.695\|GO:0006351_0.693\|GO:0010605_0.693\|GO:0051252_0.692\|GO:0006355_0.689\|GO:2001141_0.689\|GO:0009890_0.688\|GO:0010558_0.688\|GO:0031327_0.688\|GO:0006366_0.685\|GO:0045892_0.680\|GO:0045934_0.680\|GO:0051253_0.680\|GO:1902679_0.680\|GO:0006354_0.670\|GO:0006368_0.670\|GO:0032784_0.670\|GO:0032785_0.670\|GO:0034243_0.670\|GO:0034244_0.670\|GO:0005737_0.607\|GO:0032991_0.511	IPR010405+19-603_125-456+	—	PF06209+125-456+Cofactor_of_BRCA1_(COBRA1)	—	PTHR13503+19-603+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-21;597-666	1.000	22-596	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.651	76334.350	5.758	-10.500	30.631	10.661	51.351	48.649	15.465	15.165	42.042

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	violet	1544.406	2712.172	1304.571	970.632	993.945	950.755	1879.866	1101.168	1346.689	2029.346	1736.778

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.288	-1.620	-0.316	—	—	0.994	—	0.914	—	—	—	—	—

No JSON data available for plots.

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