Hg_chrom1_TN10mRNA_1530
Organism: Heterodera glycines Gene Locus: chr1:14632816-14634046 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 1.795 | 1.052 | 0.444 | 1.715 | 0.989 | 0.191 | 1.125 | 1.143 | 1.868 | 0.974 | 1.513 | 1.518 | 0.557 | 0.787 | 1.102 | 0.896 | 0.828 | 0.495 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1466
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.804
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.811
|
0.294
|
0.037
|
0.504
|
0.075
|
0.198
|
0.195
|
0.060
|
0.036
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006171
|
1.000
|
1.000
|
Hsc_gene_2401.t3
|
Hsc_gene_2401.t1;Hsc_gene_2401.t3
|
— |
A7SWD3.1 Glucose-induced degradation protein 8 homolog [Nematostella vectensis]
|
KAI3422076.1 Glucose-induced degradation complex subunit [Globodera pallida]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.703|GO:0110165_0.702|GO:0005622_0.674|GO:0008150_0.646|GO:0016020_0.632|GO:0005737_0.619|GO:0043226_0.607|GO:0009987_0.597|GO:0043229_0.585|GO:0043227_0.576|GO:0065007_0.554|GO:0043231_0.551|GO:0050789_0.538|GO:0050794_0.521|GO:0050896_0.510
|
IPR006594+88-120+|IPR006595+134-191+|IPR013144+187-284+|IPR024964+135-278+|IPR050618+95-278+
|
SM00667+88-120+|SM00668+134-191+|SM00757+187-284+
|
PF10607+135-278+CTLH/CRA_C-terminal_to_LisH_motif_domain
|
— |
PTHR12864+95-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
36003.910
|
4.584
|
-14.500
|
28.617
|
10.932
|
53.376
|
46.624
|
12.540
|
16.077
|
43.087
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
748.824
|
510.761
|
570.303
|
574.514
|
665.881
|
615.479
|
751.324
|
661.900
|
251.429
|
1456.223
|
939.883
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.181
|
— |
0.298
|
— |
0.325
|
— | — | — | — | — |
No JSON data available for plots.