Hg_chrom1_TN10mRNA_1533
Organism: Heterodera glycines Gene Locus: chr1:14639986-14642203 Feature type: polypeptideProtein Sequence
Length: 395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 1.06 | 0.921 | 0.524 | 1.308 | 0.974 | 0.844 | 1.392 | 1.069 | 1.574 | 0.844 | 1.936 | 1.477 | 0.73 | 1.24 | 0.615 | 0.789 | 1.189 | 0.779 | 1.191 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1469
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.529
|
0.217
|
0.023
|
0.765
|
0.128
|
0.157
|
0.160
|
0.043
|
0.171
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006174
|
1.000
|
1.000
|
Hsc_gene_2399.t1
|
Hsc_gene_2399.t1
|
— |
P53489.1 Actin-related protein 2 [Caenorhabditis elegans]
|
KAI3422074.1 Actin- protein 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.838|GO:0110165_0.838|GO:0005622_0.767|GO:0008150_0.763|GO:0009987_0.710|GO:0043226_0.646|GO:0043229_0.622|GO:0005737_0.595|GO:0071840_0.567|GO:0016020_0.561|GO:0016043_0.559
|
IPR004000+6-394_7-384_7-392_27-36_53-64_65-87_120-133_145-164_241-257+|IPR020902+109-121+|IPR043129+6-158_151-392+
|
SM00268+6-394+
|
PF00022+7-392+Actin
|
G3DSA:3.30.420.40:FF:000050+2-158+Actin,_alpha_skeletal_muscle|G3DSA:3.90.640.10:FF:000005+185-276+Actin-related_protein_2
|
PTHR11937+7-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-395
|
2p9k_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.514
|
45380.290
|
6.574
|
0.500
|
27.342
|
13.165
|
44.810
|
55.190
|
14.430
|
12.911
|
43.797
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1496.907
|
2529.547
|
1419.938
|
1744.100
|
1995.464
|
1997.098
|
2575.290
|
2060.421
|
935.243
|
476.839
|
673.298
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.062
|
-0.673
|
0.405
|
0.163
|
— |
0.378
|
— |
0.465
|
— | — | — | — | — |
No JSON data available for plots.