Hg_chrom1_TN10mRNA_1535
Organism: Heterodera glycines Gene Locus: chr1:14645914-14647152 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 1.271 | 0.643 | 0.554 | 0.375 | 0.907 | 0.574 | 1.447 | 2.072 | 1.782 | 0.633 | 0.946 | 2.501 | 0.557 | 1.05 | 1.194 | 0.843 | 1.169 | 0.742 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1471
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.786
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — |
10-42
|
0.790
|
— | — |
0.000
|
— | — |
0.296
|
0.303
|
0.009
|
0.214
|
0.776
|
0.414
|
0.538
|
0.035
|
0.131
|
0.085
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006176
|
1.000
|
1.000
|
Hsc_gene_2397.t1
|
Hsc_gene_2397.t1
|
— |
Q08DE5.1 Etoposide-induced protein 2.4 homolog [Bos taurus]
|
KAI3422072.1 Etoposide-induced protein 2.4 (EI24) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0005575_0.925|GO:0110165_0.925|GO:0009987_0.900|GO:0065007_0.810|GO:0050789_0.794|GO:0005622_0.789|GO:0050794_0.770|GO:0016020_0.740|GO:0071944_0.710|GO:0005886_0.707|GO:0048519_0.706|GO:0048523_0.697|GO:0043226_0.635|GO:0043229_0.613|GO:0043227_0.610|GO:0043231_0.610|GO:0005737_0.607|GO:0005773_0.607|GO:0012505_0.570|GO:0003674_0.549|GO:0008152_0.548|GO:0044237_0.534
|
— | — |
PF07264+80-248+Sulfate_transporter_CysZ/Etoposide-induced_protein_2.4
|
— |
PTHR21389+8-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
35284.490
|
9.975
|
15.500
|
18.006
|
15.434
|
40.514
|
59.486
|
12.219
|
5.788
|
45.338
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1307.793
|
443.908
|
673.674
|
937.413
|
1130.826
|
1188.314
|
1014.706
|
999.492
|
1710.241
|
2043.290
|
1900.555
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.373
|
0.942
|
0.585
|
0.239
|
— |
-0.221
|
-0.353
|
— | — | — | — | — | — |
No JSON data available for plots.