Hg_chrom1_TN10mRNA_1536
Organism: Heterodera glycines Gene Locus: chr1:14651435-14652626 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.522 | 1.993 | 0.965 | 0.0 | 1.361 | 0.837 | 0.972 | 0.816 | 1.723 | 0.993 | 0.433 | 0.72 | 1.247 | 0.785 | 1.333 | 1.808 | 1.004 | 0.804 | 0.314 | 0.48 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1472
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.880
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.235
|
0.854
|
0.075
|
0.323
|
0.381
|
0.150
|
0.128
|
0.377
|
0.159
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006177
|
1.000
|
1.000
|
Hsc_gene_2396.t1
|
Hsc_gene_2396.t1
|
— |
Q3T0C9.1 Synaptojanin-2-binding protein [Bos taurus]
|
KAI3422071.1 synaptojanin 2 binding protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.910|GO:0110165_0.910|GO:0008150_0.856|GO:0016020_0.811|GO:0009987_0.752|GO:0005622_0.730|GO:0003674_0.641|GO:0071944_0.633|GO:0005886_0.623|GO:0043226_0.617|GO:0005737_0.577|GO:0005488_0.540|GO:0065007_0.535|GO:0043229_0.527|GO:0005515_0.524
|
IPR001478+22-104_23-107_26-98_32-107+|IPR036034+10-114_24-106+|IPR050614+32-122+
|
SM00228+32-107+
|
PF00595+26-98+PDZ_domain
|
— |
PTHR23119+32-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;91-245
|
1.000
|
2-90
|
8bq8_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
26899.620
|
4.683
|
-8.000
|
24.490
|
8.163
|
55.102
|
44.898
|
11.020
|
13.469
|
54.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
789.562
|
358.871
|
430.376
|
508.642
|
602.567
|
574.325
|
649.852
|
571.229
|
548.641
|
1656.904
|
1181.934
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.366
|
0.350
|
0.213
|
— | — | — |
0.329
|
— | — | — | — | — |
No JSON data available for plots.