SCN Proteipedia

Hg_chrom1_TN10mRNA_1537

Organism: Heterodera glycines Gene Locus: chr1:14652829-14656463 Feature type: polypeptide

Protein Sequence

Length: 754

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.679	1.172	0.94	0.777	1.282	1.224	0.568	0.796	1.503	1.577	0.944	1.638	1.695	0.51	1.299	1.004	0.674	0.965	0.408	0.663	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1473	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.593	0.168	0.067	0.543	0.096	0.126	0.080	0.018	0.105	0.071

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006178	1.000	1.000	Hsc_gene_2395.t1	Hsc_gene_2395.t1	—	Q5XXB5.1 DNA mismatch repair protein Msh2 [Chlorocebus aethiops]	KAI1724506.1 mutS domain V domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664	GO:0008150_0.904\|GO:0009987_0.803\|GO:0005575_0.771\|GO:0110165_0.771\|GO:0016020_0.693\|GO:0050896_0.677\|GO:0005622_0.662\|GO:0008152_0.653\|GO:0003674_0.636\|GO:0044238_0.636\|GO:0043170_0.620\|GO:0043226_0.614\|GO:0051716_0.599\|GO:0006139_0.589\|GO:0043229_0.589\|GO:0090304_0.580\|GO:0071840_0.577\|GO:0016043_0.572\|GO:0043227_0.563\|GO:0006950_0.558\|GO:0006259_0.557\|GO:0033554_0.540\|GO:0043231_0.536\|GO:0006996_0.535\|GO:0006974_0.523	IPR000432+652-753_655-707+\|IPR007695+14-94+\|IPR007696+285-597_307-633+\|IPR007861+464-555+\|IPR011184+1-710+\|IPR016151+3-105+\|IPR027417+607-709_608-711+\|IPR036187+309-602+\|IPR036678+107-274+\|IPR045076+63-706+	SM00533+307-633+\|SM00534+652-753+	PF00488+655-707+MutS_domain_V\|PF01624+14-94+MutS_domain_I\|PF05190+464-555+MutS_family_domain_IV\|PF05192+285-597+MutS_domain_III	—	PTHR11361+63-706+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-754	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.581	86268.660	7.030	4.000	27.056	10.477	48.011	51.989	14.191	12.865	43.236

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	turquoise	1131.424	1387.251	1113.967	1189.542	1373.585	1079.346	1470.817	1092.079	586.711	1244.978	962.863

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.546	-0.359	0.204	0.175	-0.333	0.455	—	0.570	—	—	—	—	—

No JSON data available for plots.

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