Hg_chrom1_TN10mRNA_1538
Organism: Heterodera glycines Gene Locus: chr1:14656667-14658710 Feature type: polypeptideProtein Sequence
Length: 489
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.379 | 1.487 | 0.635 | 1.227 | 1.311 | 0.487 | 0.92 | 1.136 | 1.548 | 0.961 | 0.842 | 1.761 | 0.433 | 0.793 | 1.285 | 0.704 | 0.899 | 0.944 | 0.782 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1474
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.702
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.314
|
0.010
|
0.725
|
0.108
|
0.069
|
0.141
|
0.033
|
0.094
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003072
|
1.000
|
2.000
|
Hsc_gene_2394.t1;Hsc_gene_2394.t2
|
Hsc_gene_2394.t1;Hsc_gene_2394.t2
|
— | — |
KAI1721974.1 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Ditylenchus destructor]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005085|GO:0005515|GO:0031369
|
GO:0008150_0.793|GO:0005575_0.778|GO:0110165_0.773|GO:0009987_0.744|GO:0005622_0.734|GO:0003674_0.695|GO:0065007_0.694|GO:0050789_0.676|GO:0005737_0.667|GO:0050794_0.658|GO:0005488_0.627|GO:0008152_0.621|GO:0044238_0.609|GO:0005515_0.605|GO:0043170_0.601|GO:0044237_0.600|GO:0009058_0.594|GO:0048518_0.584|GO:0044249_0.577|GO:0009059_0.574|GO:0019538_0.567|GO:0010467_0.565|GO:0098772_0.517|GO:0006412_0.514|GO:0006414_0.514|GO:0030234_0.510
|
IPR003307+306-484_408-484+|IPR016024+345-478+|IPR044123+313-482+|IPR051956+284-486+
|
— |
PF02020+408-484+eIF4-gamma/eIF5/eIF2-epsilon
|
— |
PTHR45887+284-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
471-489
|
1.000
|
1-470
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
55799.800
|
4.542
|
-21.500
|
27.607
|
12.065
|
51.943
|
48.057
|
12.065
|
15.542
|
47.239
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1905.159
|
2105.030
|
1724.263
|
1610.271
|
1595.824
|
1326.489
|
1239.856
|
1470.426
|
2565.394
|
2258.964
|
2390.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.517
|
-0.523
|
— | — |
-0.252
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.