Hg_chrom1_TN10mRNA_154
Organism: Heterodera glycines Gene Locus: chr1:1109598-1112182 Feature type: polypeptideProtein Sequence
Length: 144
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 0.807 | 1.263 | 0.0 | 2.315 | 1.068 | 1.075 | 0.694 | 0.617 | 0.845 | 1.789 | 2.859 | 1.157 | 0.401 | 1.276 | 0.694 | 0.569 | 0.842 | 0.0 | 0.204 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_149
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|cell_membrane
|
— |
RRKEKHRKMELEREKMR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.198
|
0.387
|
0.069
|
0.503
|
0.250
|
0.310
|
0.534
|
0.021
|
0.572
|
0.133
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005588
|
1.000
|
1.000
|
Hsc_gene_22575.t1
|
Hsc_gene_22575.t1
|
— |
Q60PP8.1 Putative complexin-1 [Caenorhabditis briggsae]
|
KAI6241280.1 Cpx-1 [Aphelenchoides fujianensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006836|GO:0019905
|
GO:0005575_0.933|GO:0110165_0.930|GO:0016020_0.855|GO:0008150_0.663|GO:0005622_0.659|GO:0009987_0.622|GO:0071944_0.571|GO:0005737_0.562|GO:0065007_0.559|GO:0005886_0.557|GO:0050789_0.546|GO:0030054_0.541|GO:0045202_0.518|GO:0071840_0.510
|
IPR008849+3-131_4-135+
|
— |
PF05835+3-131+Synaphin_protein
|
G3DSA:1.20.5.580:FF:000002+21-81+Complexin,_isoform_AB
|
PTHR16705+4-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-144
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
16179.200
|
5.172
|
-3.000
|
40.278
|
6.250
|
56.250
|
43.750
|
19.444
|
20.833
|
43.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
597.034
|
510.903
|
1490.782
|
725.664
|
531.055
|
635.487
|
483.254
|
1090.812
|
263.165
|
364.167
|
320.880
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.316
|
0.369
|
-0.930
|
-0.482
|
0.273
|
-0.386
|
0.675
|
-1.033
|
— | — | — | — | — |
No JSON data available for plots.