SCN Proteipedia

Hg_chrom1_TN10mRNA_1540

Organism: Heterodera glycines Gene Locus: chr1:14666810-14675154 Feature type: polypeptide

Protein Sequence

Length: 921

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.884	0.48	1.145	0.412	1.176	0.807	0.982	1.086	1.52	1.012	0.642	1.597	1.749	0.752	1.197	0.853	1.086	1.25	1.336	0.671	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1476	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.993

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RREFIETMRELRRKNP,RRLVGGGDIVRKRLER,KKMSDMSKVQERFQRRLER	—	—	—	—	—	—	0.000	—	—	0.091	0.236	0.008	0.108	0.469	0.318	0.313	0.015	0.862	0.011

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003073	1.000	2.000	Hsc_gene_2392.t1;Hsc_gene_2392.t2	Hsc_gene_2390.t1;Hsc_gene_2392.t1;Hsc_gene_2392.t2	—	Q01728.3 Sodium/calcium exchanger 1 [Rattus norvegicus]	KAH7722403.1 sodium/calcium exchanger 3-like protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005432\|GO:0006816\|GO:0007154\|GO:0016020\|GO:0055085	GO:0008150_0.914\|GO:0005575_0.879\|GO:0110165_0.875\|GO:0006810_0.814\|GO:0051179_0.814\|GO:0051234_0.814\|GO:0071944_0.787\|GO:0016020_0.782\|GO:0005886_0.775\|GO:0009987_0.767\|GO:0003674_0.735\|GO:0006811_0.735\|GO:0055085_0.687\|GO:0065007_0.668\|GO:0032501_0.653\|GO:0005215_0.643\|GO:0022857_0.643\|GO:0034220_0.628\|GO:0098660_0.606\|GO:0015075_0.597\|GO:0006812_0.586\|GO:0098655_0.586\|GO:0030054_0.584\|GO:0098662_0.581\|GO:0030001_0.579\|GO:0015318_0.570\|GO:0006814_0.566\|GO:0008324_0.566\|GO:0035725_0.544\|GO:0022890_0.541\|GO:0050896_0.539\|GO:0050789_0.538\|GO:0046873_0.537\|GO:0015081_0.524\|GO:0005622_0.522\|GO:0045202_0.518\|GO:0006816_0.514\|GO:0022804_0.513\|GO:0070588_0.513\|GO:0022853_0.508\|GO:0015291_0.506	IPR003644+331-434_343-448_465-564_471-572+\|IPR004836+3-921_753-765_766-777_779-791_792-805+\|IPR004837+24-193_748-910+\|IPR032452+199-326+\|IPR038081+332-469_346-475_470-661_475-652+\|IPR044880+74-205_707-912+\|IPR051171+3-919+	SM00237+331-434_465-564+	PF01699+24-193_748-910+Sodium/calcium_exchanger_protein\|PF03160+343-448_471-572+Calx-beta_domain\|PF16494+199-326+C-terminal_extension_of_sodium/calcium_exchanger_domain	—	PTHR11878+3-919+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	583-637	2.000	1-582;638-921	2fws_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.608	102737.340	5.039	-20.000	25.624	12.486	43.431	56.569	12.269	13.355	50.163

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	3084.886	4351.034	5245.932	4952.362	1771.314	764.723	627.372	2709.610	1933.845	4387.614	3335.999

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	-1.515	-1.197	-0.276	1.724	-1.970	—	—	—	—	—

No JSON data available for plots.

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