Hg_chrom1_TN10mRNA_1543
Organism: Heterodera glycines Gene Locus: chr1:14676813-14678095 Feature type: polypeptideProtein Sequence
Length: 228
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.428 | 0.718 | 0.454 | 2.047 | 0.45 | 0.679 | 1.316 | 1.17 | 1.304 | 0.864 | 2.064 | 1.462 | 0.843 | 1.432 | 0.815 | 0.36 | 1.196 | 1.687 | 0.645 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1479
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.512
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — |
25-48
|
0.986
|
— | — | — | — |
0.000
|
— | — |
0.389
|
0.397
|
0.020
|
0.688
|
0.044
|
0.101
|
0.092
|
0.332
|
0.082
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006182
|
1.000
|
1.000
|
Hsc_gene_2388.t1
|
Hsc_gene_2388.t1
|
— |
Q9D142.1 Uridine diphosphate glucose pyrophosphatase NUDT14 [Mus musculus]
|
KAH7722418.1 UDP-sugar diphosphatase [Aphelenchus avenae]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.847|GO:0005575_0.610|GO:0110165_0.608|GO:0008150_0.593|GO:0005622_0.579|GO:0005737_0.557|GO:0009987_0.528
|
IPR000086+45-210+|IPR015797+18-218+
|
— | — |
G3DSA:3.90.79.10:FF:000035+46-224+Uridine_diphosphate_glucose_pyrophosphatase
|
PTHR11839+21-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
26474.290
|
5.238
|
-5.000
|
31.579
|
12.281
|
47.368
|
52.632
|
15.351
|
16.228
|
42.544
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
yellow
|
1465.895
|
1344.126
|
1192.904
|
1271.529
|
1507.799
|
1226.779
|
1969.561
|
1416.889
|
972.093
|
1960.627
|
1536.970
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.402
|
-0.217
|
0.201
|
0.214
|
-0.283
|
0.694
|
— |
0.618
|
— | — | — | — | — |
No JSON data available for plots.