Hg_chrom1_TN10mRNA_1544
Organism: Heterodera glycines Gene Locus: chr1:14678372-14679484 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.858 | 0.343 | 0.403 | 0.891 | 0.431 | 0.946 | 0.571 | 1.107 | 1.23 | 1.895 | 1.006 | 0.868 | 2.87 | 1.064 | 0.602 | 1.265 | 0.907 | 0.95 | 1.135 | 1.302 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1480
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.884
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
PTKQKKKTTKEKTKQKKS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.201
|
0.072
|
0.116
|
0.174
|
0.691
|
0.164
|
0.144
|
0.044
|
0.185
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006183
|
1.000
|
1.000
|
Hsc_gene_2387.t1
|
Hsc_gene_2387.t1
|
— | — |
KAI1720582.1 putative aquaporin-10 [Ditylenchus destructor]
|
No
|
-0.750
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0050896_0.794|GO:0006950_0.714|GO:0009605_0.696|GO:0002376_0.693|GO:0044419_0.693|GO:0009607_0.690|GO:0043207_0.690|GO:0051707_0.690|GO:0006952_0.689|GO:0098542_0.681|GO:0006955_0.679|GO:0045087_0.678|GO:0140546_0.678
|
IPR016697+6-271+|IPR023271+32-271_40-253+|IPR051883+10-268+
|
— | — | — |
PTHR21191+10-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
260-271
|
1.000
|
1-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
30709.370
|
9.769
|
16.000
|
16.605
|
18.450
|
36.162
|
63.838
|
11.808
|
4.797
|
44.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1483.023
|
1353.914
|
1033.985
|
1136.705
|
1518.617
|
1546.430
|
2169.854
|
1535.701
|
287.946
|
2411.562
|
1501.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.618
|
-0.390
|
0.245
|
0.386
|
— |
0.499
|
— |
0.641
|
-3.176
|
— | — | — | — |
No JSON data available for plots.