Hg_chrom1_TN10mRNA_1545
Organism: Heterodera glycines Gene Locus: chr1:14679862-14682376 Feature type: polypeptideProtein Sequence
Length: 471
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.913 | 1.086 | 1.004 | 0.732 | 0.991 | 0.762 | 0.834 | 1.486 | 1.651 | 1.033 | 0.965 | 1.624 | 1.18 | 0.735 | 1.17 | 1.001 | 1.009 | 1.094 | 0.327 | 0.624 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1481
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.826
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.120
|
0.941
|
0.033
|
0.250
|
0.031
|
0.085
|
0.073
|
0.058
|
0.053
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006184
|
1.000
|
1.000
|
Hsc_gene_2386.t1
|
Hsc_gene_2386.t1
|
— |
P38942.3 4-hydroxybutyrate coenzyme A transferase [Clostridium kluyveri DSM 555]
|
KAF7633248.1 AcetylCoA_hyd_C domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006083|GO:0008410|GO:0008775
|
GO:0005575_0.890|GO:0110165_0.883|GO:0005622_0.808|GO:0016020_0.801|GO:0005737_0.778|GO:0043226_0.762|GO:0043229_0.747|GO:0043227_0.715|GO:0043231_0.709|GO:0008150_0.594|GO:0005739_0.563|GO:0003674_0.549|GO:0009987_0.537
|
IPR003702+45-211+|IPR026888+306-460+|IPR037171+39-257_223-467+|IPR038460+325-469+|IPR046433+28-471+
|
— |
PF02550+45-211+Acetyl-CoA_hydrolase/transferase_N-terminal_domain|PF13336+306-460+Acetyl-CoA_hydrolase/transferase_C-terminal_domain
|
— |
PTHR21432+28-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-471
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
52067.720
|
8.024
|
10.000
|
26.539
|
9.766
|
47.346
|
52.654
|
15.074
|
11.465
|
51.380
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1371.457
|
849.111
|
1425.099
|
1036.978
|
1033.279
|
1182.949
|
1610.913
|
1460.390
|
777.670
|
2192.351
|
1586.059
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
0.151
|
-0.350
|
— |
0.210
|
0.456
|
— |
0.284
|
— | — | — | — | — |
No JSON data available for plots.