Hg_chrom1_TN10mRNA_1547
Organism: Heterodera glycines Gene Locus: chr1:14686016-14687353 Feature type: polypeptideProtein Sequence
Length: 108
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.077 | 1.178 | 0.639 | 0.926 | 1.187 | 0.992 | 0.926 | 1.235 | 1.251 | 1.684 | 1.089 | 2.315 | 0.534 | 0.756 | 0.529 | 0.759 | 1.122 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1483
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.176
|
0.570
|
0.048
|
0.762
|
0.125
|
0.167
|
0.120
|
0.112
|
0.224
|
0.175
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006186
|
1.000
|
1.000
|
Hsc_gene_2384.t1
|
Hsc_gene_2384.t1
|
— |
Q9ESH6.3 Glutaredoxin-1 [Rattus norvegicus]
|
KAI3420983.1 Protein CBR-glrx-10 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.755|GO:0110165_0.743|GO:0005622_0.680|GO:0008150_0.654|GO:0005737_0.648|GO:0016020_0.637|GO:0043226_0.634|GO:0043229_0.578|GO:0043227_0.571|GO:0003674_0.566|GO:0043231_0.526|GO:0009987_0.503
|
IPR002109+17-81+|IPR011899+17-100+|IPR014025+17-35_65-78_79-92+|IPR036249+5-106+|IPR047185+5-108+
|
— |
PF00462+17-81+Glutaredoxin
|
— |
PTHR46185+5-108+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-108
|
7ncw_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
11941.850
|
9.244
|
4.000
|
28.704
|
10.185
|
46.296
|
53.704
|
16.667
|
12.037
|
48.148
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2059.759
|
1421.931
|
1072.080
|
1242.990
|
1853.640
|
1607.940
|
1220.998
|
1146.810
|
1777.326
|
4091.054
|
3099.457
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.638
|
-0.331
|
0.323
|
0.544
|
-0.190
|
-0.388
|
-0.589
|
— | — | — | — | — | — |
No JSON data available for plots.