Hg_chrom1_TN10mRNA_1549
Organism: Heterodera glycines Gene Locus: chr1:14694772-14698026 Feature type: polypeptideProtein Sequence
Length: 463
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.854 | 0.904 | 1.1 | 0.298 | 1.332 | 1.329 | 0.669 | 1.188 | 1.296 | 1.372 | 0.72 | 1.525 | 1.38 | 0.581 | 1.499 | 1.358 | 0.637 | 0.818 | 0.166 | 0.889 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1485
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKKR
|
— | — |
19-88
|
0.996
|
— | — |
0.000
|
— | — |
0.269
|
0.288
|
0.043
|
0.543
|
0.155
|
0.378
|
0.321
|
0.044
|
0.402
|
0.433
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006188
|
1.000
|
1.000
|
Hsc_gene_2382.t1
|
Hsc_gene_2382.t1
|
— |
P70075.1 Annexin A5 [Cynops pyrrhogaster]
|
KAI1720706.1 annexin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.882|GO:0110165_0.875|GO:0008150_0.759|GO:0016020_0.756|GO:0003674_0.735|GO:0005622_0.682|GO:0005488_0.655|GO:0009987_0.647|GO:0043226_0.643|GO:0071944_0.633|GO:0043227_0.591|GO:0005737_0.583|GO:0043229_0.567|GO:0005886_0.540|GO:0065007_0.528|GO:0043231_0.516|GO:0050789_0.516
|
IPR001464+139-161_179-195_392-412_420-435+|IPR018502+124-196_136-194_142-194_201-264_379-450_383-445_396-448+|IPR037104+123-195_123-453_197-268_382-450+
|
SM00335+142-194_396-448+
|
PF00191+136-194_201-264_383-445+Annexin
|
G3DSA:1.10.220.10:FF:000001+380-451+Annexin
|
PTHR10502+121-449+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-463
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
52391.240
|
6.000
|
-3.500
|
28.510
|
10.583
|
50.972
|
49.028
|
14.471
|
14.039
|
45.572
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
279.984
|
274.216
|
677.507
|
295.343
|
80.245
|
52.886
|
97.775
|
461.225
|
63.300
|
450.256
|
284.418
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.076
|
— |
-1.089
|
-1.912
|
-0.587
|
0.897
|
3.032
|
-2.100
|
— | — | — | — | — |
No JSON data available for plots.