Hg_chrom1_TN10mRNA_1554
Organism: Heterodera glycines Gene Locus: chr1:14703739-14707326 Feature type: polypeptideProtein Sequence
Length: 656
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 0.993 | 0.416 | 0.683 | 0.584 | 1.29 | 0.944 | 0.534 | 1.186 | 1.833 | 0.439 | 1.524 | 2.287 | 0.674 | 0.902 | 1.263 | 0.925 | 0.97 | 0.938 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1490
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.595
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
LGEV
|
— | — |
24-44
|
0.997
|
— | — |
0.000
|
— | — |
0.019
|
0.108
|
0.035
|
0.055
|
0.271
|
0.438
|
0.282
|
0.020
|
0.685
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006191
|
1.000
|
1.000
|
Hsc_gene_2379.t1
|
Hsc_gene_2379.t1
|
— |
Q8BYF6.1 Sodium-coupled monocarboxylate transporter 1 [Mus musculus]
|
KAI1720748.1 sodium:solute symporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.959|GO:0009987_0.922|GO:0051179_0.918|GO:0051234_0.913|GO:0006810_0.910|GO:0055085_0.878|GO:0003674_0.850|GO:0005215_0.827|GO:0022857_0.827|GO:0005575_0.800|GO:0110165_0.800|GO:0016020_0.772|GO:0005886_0.759|GO:0071944_0.759|GO:0006811_0.752|GO:0034220_0.752|GO:0098660_0.722|GO:0015075_0.708|GO:0015318_0.679|GO:0006812_0.664|GO:0098655_0.661|GO:0098662_0.652|GO:0030001_0.645|GO:0008324_0.635|GO:0006814_0.616|GO:0022890_0.610|GO:0046873_0.599|GO:0035725_0.596|GO:0015081_0.580|GO:0022804_0.562|GO:0015291_0.558|GO:0022853_0.558|GO:0015293_0.553|GO:0015294_0.552|GO:0015370_0.547
|
IPR001734+3-479_59-462_61-462+|IPR038377+52-591+|IPR051163+2-575+
|
— |
PF00474+61-462+Sodium:solute_symporter_family
|
— |
PTHR42985+2-575+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
603-656
|
1.000
|
1-602
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
72175.000
|
8.731
|
13.500
|
14.177
|
13.262
|
37.957
|
62.043
|
8.384
|
5.793
|
49.390
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
639.812
|
59.729
|
796.240
|
258.795
|
212.131
|
493.814
|
1416.542
|
201.630
|
1148.393
|
648.303
|
862.627
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.509
|
1.977
|
-1.514
|
-0.320
|
1.235
|
1.530
|
-1.395
|
2.953
|
— |
-2.002
|
— | — | — |
No JSON data available for plots.