Hg_chrom1_TN10mRNA_1559
Organism: Heterodera glycines Gene Locus: chr1:14717067-14717986 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.814 | 0.93 | 0.727 | 0.345 | 1.5 | 1.923 | 0.595 | 0.75 | 1.778 | 1.081 | 1.288 | 0.882 | 0.556 | 1.058 | 1.429 | 0.714 | 0.738 | 1.364 | 0.385 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1494
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.589
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRKL
|
4-81
|
0.698
|
34-54
|
0.994
|
— | — |
0.000
|
— | — |
0.081
|
0.905
|
0.136
|
0.217
|
0.030
|
0.012
|
0.027
|
0.008
|
0.083
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006193
|
1.000
|
1.000
|
Hsc_gene_2376.t1
|
Hsc_gene_2376.t1
|
— |
P34264.1 Large ribosomal subunit protein uL11m [Caenorhabditis elegans]
|
KAH7707316.1 Protein MRPL-11 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.925|GO:0110165_0.879|GO:0005622_0.823|GO:0005737_0.734|GO:0043226_0.678|GO:0043229_0.652|GO:0016020_0.605|GO:0043227_0.535|GO:0043231_0.520
|
IPR000911+24-168_25-163_29-161_29-162+|IPR020783+93-161+|IPR020784+30-87+|IPR036769+89-161_93-162+|IPR036796+27-92_28-92+
|
SM00649+29-162+
|
PF00298+93-161+Ribosomal_protein_L11,_RNA_binding_domain|PF03946+30-87+Ribosomal_protein_L11,_N-terminal_domain
|
G3DSA:1.10.10.250:FF:000003+90-162+Mitochondrial_ribosomal_protein_L11
|
PTHR11661+24-168+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
3iy9_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
22559.030
|
9.700
|
6.500
|
30.000
|
5.500
|
51.000
|
49.000
|
17.000
|
13.000
|
45.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1910.847
|
1672.992
|
2036.762
|
1390.307
|
1289.045
|
979.754
|
1223.834
|
1205.543
|
3347.189
|
2175.226
|
2677.495
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.404
|
-0.442
|
-0.141
|
-0.381
|
0.332
|
— | — | — | — | — | — | — |
No JSON data available for plots.