Hg_chrom1_TN10mRNA_1560
Organism: Heterodera glycines Gene Locus: chr1:14718073-14719168 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 1.312 | 1.585 | 0.177 | 1.197 | 0.92 | 0.672 | 0.256 | 1.595 | 1.109 | 1.01 | 2.112 | 2.137 | 0.394 | 1.57 | 1.099 | 0.757 | 0.777 | 0.0 | 0.603 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1495
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.408
|
0.192
|
0.091
|
0.584
|
0.386
|
0.366
|
0.330
|
0.064
|
0.510
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006194
|
1.000
|
1.000
|
Hsc_gene_2375.t1
|
Hsc_gene_2375.t1
|
— |
P61022.2 Calcineurin B homologous protein 1 [Mus musculus]
|
KAI1719402.1 EF hand domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.789|GO:0005575_0.785|GO:0110165_0.748|GO:0005622_0.684|GO:0003674_0.667|GO:0016020_0.585|GO:0009987_0.582|GO:0005737_0.573|GO:0043226_0.522|GO:0005488_0.511
|
IPR002048+110-145_112-180_114-142_114-180_151-186_155-183+|IPR011992+13-190+|IPR018247+123-135_164-176+|IPR051875+4-194+
|
SM00054+114-142_155-183+
|
PF13499+112-180+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000003+21-183+Calmodulin_A
|
PTHR46002+4-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
2bec_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
22362.380
|
5.157
|
-2.500
|
30.769
|
10.256
|
52.308
|
47.692
|
14.872
|
15.897
|
45.641
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
2883.941
|
922.368
|
2222.342
|
1630.887
|
2217.464
|
2547.008
|
3221.023
|
4016.945
|
4978.359
|
2591.706
|
3614.557
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.040
|
0.685
|
-0.338
|
0.411
|
0.215
|
0.350
|
0.554
|
— | — | — | — | — | — |
No JSON data available for plots.