Hg_chrom1_TN10mRNA_1561
Organism: Heterodera glycines Gene Locus: chr1:14719256-14719832 Feature type: polypeptideProtein Sequence
Length: 164
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.709 | 1.418 | 1.109 | 0.0 | 2.134 | 0.782 | 0.508 | 0.61 | 1.22 | 0.989 | 1.109 | 1.076 | 1.186 | 0.586 | 1.12 | 1.132 | 1.1 | 1.386 | 0.938 | 0.179 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1496
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.684
|
0.298
|
0.010
|
0.501
|
0.131
|
0.067
|
0.099
|
0.025
|
0.071
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006195
|
1.000
|
1.000
|
Hsc_gene_2374.t1
|
Hsc_gene_2374.t1
|
— |
P0C659.1 Probable RNA-binding protein EIF1AD [Caenorhabditis briggsae]
|
KAF7623618.1 S1-like domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003743|GO:0006413
|
GO:0005575_0.906|GO:0110165_0.897|GO:0005622_0.867|GO:0016020_0.802|GO:0043226_0.793|GO:0043229_0.765|GO:0043227_0.744|GO:0043231_0.713|GO:0005634_0.659|GO:0005737_0.558
|
IPR001253+20-103+|IPR006196+14-89_24-86+|IPR012340+1-144_6-106+|IPR039294+1-128+
|
SM00652+20-103+
|
PF01176+24-86+Translation_initiation_factor_1A_/_IF-1
|
— |
PTHR21641+1-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
111-164
|
1.000
|
1-110
|
6zxh_j
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
18542.740
|
4.506
|
-9.000
|
32.927
|
7.317
|
56.707
|
43.293
|
14.024
|
18.902
|
49.390
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
796.422
|
712.083
|
701.687
|
664.090
|
650.509
|
532.214
|
450.656
|
711.236
|
880.319
|
1165.679
|
1043.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.250
|
-0.238
|
— | — |
-0.275
|
— | — |
-0.514
|
— | — | — | — | — |
No JSON data available for plots.