SCN Proteipedia

Hg_chrom1_TN10mRNA_1563

Organism: Heterodera glycines Gene Locus: chr1:14722589-14724250 Feature type: polypeptide

Protein Sequence

Length: 310

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.638	0.75	1.056	0.445	1.398	1.075	0.461	0.968	1.075	1.046	2.102	1.518	0.986	0.993	1.712	0.415	1.216	0.978	1.241	0.38	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1498	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.988

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RFVKRRA,KKKVQNAKDIRKTKQKSK,KKVQNAKDIRKTKQKSKTK,KQKKMKREQEEAEKRVKRKEQRDSELVPPLEPRRKGKT	—	—	—	—	—	—	0.000	—	—	0.731	0.192	0.005	0.318	0.080	0.015	0.060	0.001	0.045	0.129

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006197	1.000	1.000	Hsc_gene_2372.t1	Hsc_gene_2372.t1	—	Q8BGA5.1 KRR1 small subunit processome component homolog [Mus musculus]	KAF7636064.1 KRR1 small subunit processome component [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.939\|GO:0110165_0.937\|GO:0008150_0.932\|GO:0005622_0.915\|GO:0043226_0.898\|GO:0009987_0.896\|GO:0016020_0.886\|GO:0043229_0.881\|GO:0043227_0.814\|GO:0043231_0.794\|GO:0043228_0.790\|GO:0043232_0.790\|GO:0071840_0.787\|GO:0005634_0.733\|GO:0022613_0.718\|GO:0044085_0.718\|GO:0042254_0.707\|GO:0031974_0.695\|GO:0031981_0.695\|GO:0043233_0.695\|GO:0070013_0.695\|GO:0005730_0.645\|GO:0032991_0.629\|GO:0008152_0.618\|GO:0044238_0.618\|GO:0043170_0.616\|GO:0009058_0.610\|GO:0009059_0.604\|GO:0044237_0.604\|GO:0044249_0.604\|GO:0010467_0.597\|GO:0006139_0.595\|GO:0090304_0.576\|GO:0034654_0.570\|GO:0141187_0.562\|GO:0003674_0.554\|GO:0016070_0.552\|GO:0032774_0.550\|GO:0006396_0.539\|GO:0016072_0.524\|GO:0005488_0.521\|GO:0006364_0.512\|GO:1990904_0.501	IPR004087+85-157+\|IPR024166+16-310_20-305+\|IPR036612+18-84_85-187_87-189+\|IPR041174+21-84+\|IPR048548+87-176+\|IPR048549+86-177+	SM00322+85-157+	PF17903+21-84+Krr1_KH1_domain\|PF21800+87-176+KRR1_small_subunit_processome_component,_second_KH_domain	—	PTHR12581+20-305+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-13;189-310	1.000	14-188	7mq9_NY	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.703	36265.190	10.601	28.000	38.387	8.387	56.129	43.871	24.194	14.194	41.613

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	green	2593.897	1480.396	1694.907	1699.660	1975.277	1929.642	2401.184	1719.439	4447.735	3174.809	3720.349

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	0.113	0.185	—	0.327	-0.274	0.626	—	-1.235	—	—	—

No JSON data available for plots.

Back to Browser