Hg_chrom1_TN10mRNA_1564
Organism: Heterodera glycines Gene Locus: chr1:14724393-14725883 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 0.694 | 1.14 | 0.926 | 0.995 | 0.536 | 0.711 | 0.896 | 0.995 | 0.726 | 0.859 | 2.458 | 1.493 | 1.033 | 1.401 | 0.981 | 0.93 | 1.673 | 1.148 | 0.966 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1499
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.764
|
0.079
|
0.024
|
0.504
|
0.114
|
0.315
|
0.111
|
0.069
|
0.123
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006198
|
1.000
|
1.000
|
Hsc_gene_2371.t1
|
Hsc_gene_2371.t1
|
— |
Q1JQB2.1 Mitotic checkpoint protein BUB3 [Bos taurus]
|
KAI1720733.1 mitotic checkpoint protein BUB3 [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.826|GO:0110165_0.821|GO:0008150_0.812|GO:0005622_0.741|GO:0009987_0.730|GO:0043226_0.670|GO:0043229_0.646|GO:0016020_0.579|GO:0065007_0.542|GO:0050789_0.531|GO:0050794_0.508
|
IPR001680+9-49_55-92_94-133_101-133_101-135_136-172_229-271_245-271_246-271_274-309+|IPR015943+7-335+|IPR019775+120-134+|IPR036322+20-304+
|
SM00320+9-49_55-92_94-133_136-172_229-271_274-309+
|
PF00400+101-133_245-271+WD_domain,_G-beta_repeat
|
— |
PTHR10971+19-333+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
37824.570
|
7.557
|
4.000
|
26.567
|
11.940
|
44.179
|
55.821
|
14.328
|
12.239
|
53.433
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
889.562
|
650.931
|
555.682
|
939.729
|
1102.641
|
825.109
|
1411.886
|
549.796
|
758.014
|
1059.908
|
930.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.458
|
0.393
|
0.867
|
0.199
|
-0.403
|
0.786
|
-0.689
|
1.503
|
— | — | — | — | — |
No JSON data available for plots.