Hg_chrom1_TN10mRNA_1569
Organism: Heterodera glycines Gene Locus: chr1:14745779-14747857 Feature type: polypeptideProtein Sequence
Length: 334
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.01 | 1.114 | 0.871 | 0.723 | 1.048 | 1.152 | 0.713 | 0.898 | 1.198 | 1.457 | 0.907 | 0.881 | 1.497 | 1.209 | 0.978 | 0.984 | 0.638 | 0.953 | 1.152 | 0.704 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1504
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
— | — | — |
45-75
|
0.983
|
1-35
|
— |
0.836
|
— |
0.000
|
0.093
|
0.019
|
0.002
|
0.202
|
0.353
|
0.494
|
0.227
|
0.042
|
0.945
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006203
|
1.000
|
1.000
|
Hsc_gene_12620.t1
|
Hsc_gene_12620.t1
|
— |
O44730.3 Zwei Ig domain protein zig-7 [Caenorhabditis elegans]
|
KAH7706738.1 Immunoglobulin I-set domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.928|GO:0110165_0.921|GO:0008150_0.834|GO:0009987_0.760|GO:0071944_0.702|GO:0016020_0.698|GO:0003674_0.639|GO:0005622_0.601|GO:0065007_0.599|GO:0050789_0.583|GO:0005886_0.579|GO:0050794_0.531|GO:0050896_0.503
|
IPR003598+174-247+|IPR003599+168-264+|IPR007110+145-251+|IPR013098+172-248+|IPR013783+167-258+|IPR036179+172-248+|IPR050958+128-247+
|
SM00408+174-247+|SM00409+168-264+
|
PF07679+172-248+Immunoglobulin_I-set_domain
|
— |
PTHR45080+128-247+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
310-334
|
1.000
|
1-309
|
2vra_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
37218.730
|
7.005
|
2.000
|
23.653
|
11.078
|
43.713
|
56.287
|
12.575
|
11.078
|
49.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
midnightblue
|
1789.112
|
1965.537
|
2425.590
|
1123.901
|
1331.100
|
2455.351
|
1369.469
|
6519.387
|
705.680
|
851.731
|
789.138
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.944
|
-1.001
|
0.213
|
0.897
|
-0.832
|
1.304
|
-2.108
|
— | — | — | — | — |