Hg_chrom1_TN10mRNA_1571
Organism: Heterodera glycines Gene Locus: chr1:14760118-14763206 Feature type: polypeptideProtein Sequence
Length: 508
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 1.465 | 1.181 | 0.339 | 0.984 | 1.211 | 0.797 | 1.476 | 1.444 | 1.011 | 0.626 | 1.158 | 1.476 | 0.681 | 1.647 | 0.647 | 1.033 | 1.133 | 0.303 | 1.042 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.506
|
0.218
|
0.016
|
0.629
|
0.080
|
0.042
|
0.039
|
0.002
|
0.049
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006205
|
1.000
|
1.000
|
Hsc_gene_12622.t1
|
Hsc_gene_12622.t1
|
— |
Q91372.1 Probable ATP-dependent RNA helicase DDX4 [Xenopus laevis]
|
KAI3422036.1 putative ATP-dependent RNA helicase ddx4 [Globodera pallida]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003724|GO:0005524
|
GO:0005575_0.781|GO:0110165_0.764|GO:0008150_0.729|GO:0005622_0.717|GO:0003674_0.697|GO:0005737_0.660|GO:0009987_0.616|GO:0043226_0.592|GO:0043229_0.577|GO:0005488_0.523
|
IPR001650+313-473_334-433_350-433+|IPR011545+94-274+|IPR014001+89-301_102-285+|IPR014014+70-98+|IPR027417+46-287_149-446_288-477+
|
SM00487+89-301+|SM00490+350-433+
|
PF00270+94-274+DEAD/DEAH_box_helicase|PF00271+334-433+Helicase_conserved_C-terminal_domain
|
— |
PTHR47958+68-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-34
|
1.000
|
35-508
|
2yjt_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
57823.370
|
7.370
|
6.500
|
27.559
|
12.205
|
49.409
|
50.591
|
15.157
|
12.402
|
49.016
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
greenyellow
|
426.781
|
280.538
|
295.017
|
311.207
|
494.964
|
408.248
|
1077.179
|
298.745
|
149.037
|
568.178
|
388.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.187
|
0.638
|
-0.264
|
1.411
|
-0.556
|
1.994
|
— | — | — | — | — |
No JSON data available for plots.