Hg_chrom1_TN10mRNA_1574
Organism: Heterodera glycines Gene Locus: chr1:14770820-14776411 Feature type: polypeptideProtein Sequence
Length: 1,122
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.643 | 1.057 | 1.134 | 0.738 | 1.025 | 1.394 | 0.499 | 0.579 | 1.466 | 1.819 | 0.77 | 1.52 | 1.436 | 0.531 | 1.128 | 1.222 | 0.716 | 1.013 | 0.823 | 0.813 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1509
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.369
|
0.131
|
0.011
|
0.619
|
0.212
|
0.405
|
0.356
|
0.035
|
0.299
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006208
|
1.000
|
1.000
|
Hsc_gene_12625.t2
|
Hsc_gene_12625.t1;Hsc_gene_12625.t2
|
— |
Q704U0.1 Exportin-7-A [Xenopus laevis]
|
KAI1719305.1 exportin-7-B [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005049|GO:0006886|GO:0031267|GO:0051169
|
GO:0008150_0.962|GO:0009987_0.916|GO:0005575_0.915|GO:0110165_0.910|GO:0003674_0.852|GO:0005622_0.849|GO:0051179_0.812|GO:0006810_0.796|GO:0051234_0.796|GO:0005488_0.771|GO:0051641_0.735|GO:0051649_0.712|GO:0046907_0.701|GO:0006913_0.670|GO:0051169_0.670|GO:0005515_0.536|GO:0016020_0.514
|
IPR001494+27-91_27-92+|IPR011989+3-507+|IPR016024+19-1081+|IPR044189+10-1101+
|
SM00913+27-92+
|
PF03810+27-91+Importin-beta_N-terminal_domain
|
— |
PTHR12596+10-1101+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1103-1122
|
1.000
|
1-1102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
127808.420
|
5.242
|
-13.500
|
24.153
|
10.160
|
47.059
|
52.941
|
11.765
|
12.389
|
45.009
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
paleturquoise
|
2991.424
|
3294.453
|
3217.090
|
3299.452
|
3446.842
|
3525.111
|
5496.265
|
3319.747
|
2375.332
|
1706.371
|
1993.069
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.264
|
-0.135
|
0.145
|
— | — |
0.651
|
— |
0.871
|
— | — | — | — | — |
No JSON data available for plots.