Hg_chrom1_TN10mRNA_1575
Organism: Heterodera glycines Gene Locus: chr1:14776440-14778158 Feature type: polypeptideProtein Sequence
Length: 263
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 0.619 | 1.244 | 0.787 | 1.077 | 1.462 | 0.724 | 0.57 | 1.267 | 1.285 | 1.095 | 1.118 | 1.479 | 1.024 | 0.931 | 1.249 | 0.561 | 0.979 | 1.462 | 0.671 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1510
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.170
|
0.908
|
0.219
|
0.397
|
0.114
|
0.059
|
0.202
|
0.080
|
0.125
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006209
|
1.000
|
1.000
|
Hsc_gene_12626.t1
|
Hsc_gene_12626.t1
|
— |
Q5XJ54.1 Glutaredoxin 3 [Danio rerio]
|
KAI1720847.1 glutaredoxin domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.852|GO:0110165_0.848|GO:0008150_0.810|GO:0005622_0.767|GO:0005737_0.742|GO:0016020_0.615|GO:0043226_0.607|GO:0003674_0.606|GO:0043229_0.592|GO:0043227_0.534|GO:0043231_0.522|GO:0009987_0.516
|
IPR002109+177-239+|IPR004480+54-256+|IPR013766+39-138+|IPR033658+167-251+|IPR036249+35-138_163-261+
|
— |
PF00085+39-138+Thioredoxin|PF00462+177-239+Glutaredoxin
|
G3DSA:3.40.30.10:FF:000012+166-263+Monothiol_glutaredoxin
|
PTHR10293+54-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
262-263
|
1.000
|
1-261
|
3zyw_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
29576.810
|
5.442
|
-2.500
|
26.236
|
10.646
|
46.768
|
53.232
|
12.928
|
13.308
|
48.289
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1416.154
|
1130.828
|
1103.046
|
1180.598
|
1471.936
|
1174.438
|
1345.201
|
1217.661
|
1287.003
|
1996.532
|
1692.448
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.265
|
— |
0.206
|
0.286
|
-0.311
|
0.207
|
— |
0.287
|
— | — | — | — | — |
No JSON data available for plots.