SCN Proteipedia

Hg_chrom1_TN10mRNA_1578

Organism: Heterodera glycines Gene Locus: chr1:14785437-14786897 Feature type: polypeptide

Protein Sequence

Length: 187

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.057	0.871	0.972	0.369	2.317	1.234	0.7	1.604	1.426	0.578	0.486	1.258	1.337	0.823	1.419	1.222	0.789	0.729	0.0	0.786	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1513	—	—	1.111	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.983

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.724	0.093	0.007	0.619	0.095	0.045	0.097	0.039	0.032	0.032

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003034	2.000	1.000	Hsc_gene_21310.t1	Hsc_gene_21310.t1	—	Q9W1J3.1 Gastrulation defective protein 1 homolog [Drosophila melanogaster]	KAH7718760.1 Protein kinase domain containing protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.919\|GO:0009987_0.848\|GO:0065007_0.795\|GO:0050789_0.781\|GO:0050794_0.762\|GO:0071840_0.737\|GO:0032501_0.735\|GO:0016043_0.732\|GO:0032502_0.725\|GO:0048856_0.725\|GO:0051179_0.722\|GO:0051234_0.717\|GO:0007275_0.712\|GO:0051641_0.703\|GO:0006996_0.698\|GO:0051649_0.692\|GO:0009888_0.684\|GO:0009653_0.683\|GO:0007010_0.680\|GO:0007049_0.680\|GO:0022402_0.680\|GO:0000280_0.679\|GO:0048285_0.679\|GO:0009790_0.678\|GO:0048646_0.678\|GO:0007017_0.677\|GO:0048870_0.677\|GO:0051640_0.677\|GO:0051656_0.677\|GO:0000278_0.676\|GO:0051726_0.676\|GO:0140014_0.676\|GO:1903047_0.676\|GO:0000226_0.675\|GO:0016477_0.674\|GO:0048729_0.674\|GO:0000132_0.670\|GO:0001667_0.670\|GO:0001704_0.670\|GO:0001705_0.670\|GO:0001706_0.670\|GO:0001707_0.670\|GO:0007163_0.670\|GO:0007346_0.670\|GO:0007369_0.670\|GO:0007398_0.670\|GO:0007492_0.670\|GO:0007498_0.670\|GO:0030010_0.670\|GO:0040001_0.670\|GO:0042074_0.670\|GO:0048332_0.670\|GO:0048598_0.670\|GO:0051293_0.670\|GO:0051294_0.670\|GO:0051653_0.670\|GO:1902850_0.670	IPR051858+25-183+	—	—	—	PTHR16017+25-183+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-128	1.000	129-187	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.866	21043.080	4.410	-14.000	32.620	10.695	54.545	45.455	13.369	19.251	47.594

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	brown	129.584	188.841	194.163	178.895	193.529	190.934	176.000	100.801	141.725	1.952	61.855

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.215	—	—	—	—	-1.028	0.945	5.375	—	6.231	—	—

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