Hg_chrom1_TN10mRNA_1579
Organism: Heterodera glycines Gene Locus: chr1:14787533-14788972 Feature type: polypeptideProtein Sequence
Length: 156
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.745 | 1.044 | 0.699 | 0.221 | 1.709 | 0.657 | 0.305 | 0.321 | 0.427 | 0.953 | 1.651 | 0.754 | 0.712 | 1.233 | 2.224 | 2.198 | 0.946 | 0.583 | 0.986 | 0.377 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1514
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.598
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRP,RKANSTESTPQKKKRNE,RKSKRLRKANSTESTPQKKKRN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.960
|
0.151
|
0.011
|
0.254
|
0.011
|
0.005
|
0.005
|
0.027
|
0.037
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006211
|
1.000
|
1.000
|
Hsc_gene_12629.t1
|
Hsc_gene_12629.t1;Hsc_gene_2312.t1
|
— | — |
KAI1711984.1 cyclin-dependent kinase inhibitor domain-containing protein [Ditylenchus destructor]
|
KAJ1800452
|
0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004861|GO:0005634|GO:0051726
|
GO:0005575_0.950|GO:0110165_0.947|GO:0005622_0.926|GO:0043226_0.902|GO:0043229_0.902|GO:0008150_0.899|GO:0016020_0.886|GO:0009987_0.869|GO:0050789_0.865|GO:0065007_0.865|GO:0050794_0.852|GO:0043227_0.842|GO:0043231_0.825|GO:0005634_0.805|GO:0008152_0.793|GO:0043170_0.793|GO:0009058_0.792|GO:0009059_0.792|GO:0044237_0.792|GO:0044249_0.792|GO:0006139_0.784|GO:0044238_0.784|GO:0090304_0.784|GO:0034654_0.779|GO:0071840_0.772|GO:0019222_0.771|GO:0141187_0.771|GO:0048518_0.768|GO:0060255_0.767|GO:0080090_0.764|GO:0032501_0.759|GO:0016043_0.757|GO:0048522_0.756|GO:0032502_0.745|GO:0048856_0.745|GO:0048519_0.744|GO:0019219_0.736|GO:0048523_0.736|GO:0007275_0.732|GO:0006996_0.719|GO:0030154_0.719|GO:0048731_0.719|GO:0048869_0.719|GO:0022414_0.703|GO:0007049_0.699|GO:0022402_0.698|GO:0000280_0.695|GO:0048285_0.695|GO:0048513_0.694|GO:0050793_0.694|GO:0003006_0.692|GO:0000278_0.689|GO:0006259_0.689|GO:0140014_0.689|GO:1903047_0.689|GO:0051726_0.688|GO:0045595_0.687|GO:0048608_0.685|GO:0051301_0.685|GO:0061458_0.685|GO:0010564_0.682|GO:0007346_0.678|GO:0051052_0.678|GO:0071897_0.678|GO:0006260_0.677|GO:0044770_0.677|GO:0045787_0.677|GO:0007548_0.676|GO:0044772_0.676|GO:0045786_0.676|GO:1901987_0.676|GO:0006275_0.675|GO:0008406_0.675|GO:0010948_0.675|GO:0045137_0.675|GO:0045930_0.675|GO:1901988_0.675|GO:1901990_0.675|GO:1901991_0.675|GO:0006261_0.674|GO:0006270_0.673|GO:0090068_0.673|GO:0000082_0.670|GO:0032875_0.670|GO:0042023_0.670|GO:0044786_0.670|GO:0044843_0.670|GO:0051302_0.670|GO:0070314_0.670|GO:0090329_0.670|GO:1902806_0.670|GO:1902807_0.670|GO:1903450_0.670|GO:1903452_0.670|GO:2000045_0.670|GO:2000134_0.670
|
IPR003175+18-58+|IPR044898+11-98+
|
— |
PF02234+18-58+Cyclin-dependent_kinase_inhibitor
|
— |
PTHR10265+8-153+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-156
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
17798.950
|
10.756
|
12.500
|
36.538
|
5.769
|
64.744
|
35.256
|
22.436
|
14.103
|
49.359
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightcyan
|
770.964
|
679.726
|
655.258
|
695.223
|
974.133
|
944.528
|
800.737
|
1061.256
|
344.111
|
935.812
|
682.226
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.284
|
-0.105
|
0.195
|
0.455
|
— |
-0.227
|
— | — | — | — | — | — | — |
No JSON data available for plots.