Hg_chrom1_TN10mRNA_158
Organism: Heterodera glycines Gene Locus: chr1:1128463-1131871 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.337 | 1.097 | 0.595 | 0.814 | 1.326 | 0.718 | 1.006 | 1.213 | 1.592 | 1.001 | 1.69 | 1.596 | 0.995 | 0.821 | 0.821 | 0.707 | 0.827 | 0.884 | 0.592 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_153
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRKL
|
45-65
|
0.980
|
50-86
|
0.984
|
— | — |
0.061
|
— | — |
0.142
|
0.523
|
0.221
|
0.429
|
0.151
|
0.079
|
0.404
|
0.064
|
0.188
|
0.308
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_22567.t1
|
— |
O44750.1 Xaa-Pro aminopeptidase app-1 [Caenorhabditis elegans]
|
KAI1723199.1 metallopeptidase family m24 domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.891|GO:0110165_0.887|GO:0005622_0.749|GO:0005737_0.724|GO:0008150_0.698|GO:0003674_0.613|GO:0016020_0.565|GO:0003824_0.504|GO:0043226_0.502
|
IPR000587+174-264+|IPR029149+150-283_171-264_284-336+|IPR050422+118-335+
|
— |
PF01321+174-264+Creatinase/Prolidase_N-terminal_domain
|
— |
PTHR43763+118-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
80-131
|
2.000
|
1-79;132-348
|
4s2t_Q
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
38941.880
|
7.075
|
2.500
|
23.563
|
10.920
|
44.540
|
55.460
|
12.644
|
10.920
|
48.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
greenyellow
|
1182.771
|
259.105
|
301.549
|
186.493
|
240.923
|
552.005
|
484.233
|
319.008
|
327.700
|
4050.104
|
2454.789
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.611
|
-0.584
|
0.338
|
1.210
|
-0.179
|
-0.896
|
0.744
|
— | — |
-3.506
|
— | — |
No JSON data available for plots.