Hg_chrom1_TN10mRNA_1580
Organism: Heterodera glycines Gene Locus: chr1:14791712-14793473 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 0.936 | 2.074 | 0.0 | 2.349 | 0.86 | 0.879 | 0.336 | 1.193 | 0.816 | 0.814 | 3.948 | 1.678 | 0.258 | 0.822 | 0.384 | 1.54 | 0.712 | 0.0 | 0.197 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1515
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.636
|
0.179
|
0.046
|
0.474
|
0.198
|
0.118
|
0.173
|
0.230
|
0.365
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006212
|
1.000
|
1.000
|
Hsc_gene_12630.t1
|
Hsc_gene_12630.t1
|
T21H3.3a;T21H3.3b
|
O16305.3 Calmodulin [Caenorhabditis elegans]
|
XP_019731658.1 PREDICTED: calmodulin [Hippocampus comes]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.810|GO:0110165_0.782|GO:0005622_0.688|GO:0005737_0.684|GO:0008150_0.668|GO:0003674_0.665|GO:0005488_0.629|GO:0005515_0.586|GO:0009987_0.580|GO:0016020_0.563|GO:0043226_0.553|GO:0065007_0.541|GO:0050789_0.522|GO:0050896_0.507
|
IPR002048+8-43_12-40_12-73_12-74_44-79_48-76_81-116_83-147_85-113_85-147_117-149_121-149+|IPR011992+2-147+|IPR018247+21-33_57-69_94-106_130-142+|IPR050145+4-146+
|
SM00054+12-40_48-76_85-113_121-149+
|
PF13499+12-73_83-147+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000527+2-149+Calmodulin-3
|
PTHR23050+4-146+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-149
|
0.000
|
— |
1ooj_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
16824.590
|
3.840
|
-23.500
|
35.570
|
7.383
|
55.034
|
44.966
|
10.067
|
25.503
|
47.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
10809.980
|
5367.958
|
12910.993
|
8172.599
|
6665.345
|
8584.360
|
5522.658
|
18731.272
|
17800.696
|
9209.948
|
12891.697
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.038
|
0.469
|
-0.552
|
-0.326
|
0.380
|
-0.627
|
1.023
|
-1.621
|
— | — | — | — | — |
No JSON data available for plots.