Hg_chrom1_TN10mRNA_1581
Organism: Heterodera glycines Gene Locus: chr1:14794176-14796182 Feature type: polypeptideProtein Sequence
Length: 401
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 1.508 | 1.451 | 0.43 | 1.704 | 1.215 | 0.505 | 0.499 | 1.385 | 1.078 | 0.793 | 1.467 | 1.108 | 0.623 | 0.763 | 1.674 | 0.899 | 0.907 | 0.575 | 0.44 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1516
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.781
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRRKQNGGGGGKKQNK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.478
|
0.150
|
0.020
|
0.597
|
0.104
|
0.296
|
0.259
|
0.078
|
0.262
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006213
|
1.000
|
1.000
|
Hsc_gene_12631.t1
|
Hsc_gene_12631.t1
|
— |
Q9UHY8.2 Fasciculation and elongation protein zeta-2 [Homo sapiens]
|
KAI3422030.1 FEZ-like protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.797|GO:0009987_0.746|GO:0065007_0.699|GO:0050789_0.688|GO:0050794_0.667|GO:0003674_0.649|GO:0005575_0.641|GO:0110165_0.641|GO:0071840_0.632|GO:0016043_0.630|GO:0005622_0.593|GO:0006996_0.581|GO:0005737_0.517
|
IPR011680+53-395_72-322+
|
— |
PF07763+72-322+FEZ-like_protein
|
— |
PTHR12394+53-395+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
134-185
|
2.000
|
1-133;186-401
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
44712.410
|
4.102
|
-35.000
|
28.180
|
7.232
|
56.608
|
43.392
|
9.975
|
18.204
|
52.120
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
980.529
|
1198.314
|
893.799
|
709.180
|
822.793
|
651.073
|
1054.750
|
1053.576
|
454.580
|
1555.071
|
1083.432
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.654
|
-0.894
|
-0.224
|
0.182
|
-0.323
|
0.706
|
0.591
|
— | — | — | — | — | — |
No JSON data available for plots.