Hg_chrom1_TN10mRNA_1582
Organism: Heterodera glycines Gene Locus: chr1:14796539-14800665 Feature type: polypeptideProtein Sequence
Length: 554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.028 | 1.259 | 0.656 | 1.058 | 0.933 | 1.712 | 1.01 | 1.534 | 1.444 | 1.22 | 0.766 | 1.274 | 1.354 | 0.833 | 1.142 | 0.567 | 0.799 | 0.93 | 1.111 | 0.372 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1517
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KGKEEKE,RRDVKTLVRQHKDKGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.141
|
0.222
|
0.038
|
0.320
|
0.570
|
0.491
|
0.537
|
0.054
|
0.618
|
0.156
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006214
|
1.000
|
1.000
|
Hsc_gene_12632.t1
|
Hsc_gene_12632.t1;Hsc_gene_12632.t2;Hsc_gene_12632.t3
|
— |
Q5TYP8.1 Protein stum homolog [Danio rerio]
|
KAI1720761.1 ectodermal ciliogenesis protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0009987_0.694|GO:0003674_0.685|GO:0008152_0.542|GO:0005575_0.541|GO:0044238_0.533|GO:0110165_0.532|GO:0044237_0.526|GO:0009058_0.524|GO:0003824_0.523|GO:0043170_0.518|GO:0019538_0.514|GO:0044249_0.512|GO:0009059_0.502
|
IPR026673+370-455+|IPR040043+27-225+
|
— |
PF15795+370-455+Ectodermal_ciliogenesis_protein|PF21646+38-161+Actin_maturation_protease-like,_C-terminal_domain
|
— |
PTHR28631+27-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
490-554
|
1.000
|
1-489
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
61424.660
|
8.358
|
16.500
|
22.924
|
10.650
|
43.863
|
56.137
|
13.718
|
9.206
|
48.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
1149.250
|
1599.646
|
1466.223
|
829.684
|
718.834
|
642.517
|
887.616
|
1180.620
|
1366.481
|
1256.182
|
1303.453
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.356
|
-1.084
|
-0.712
|
-0.239
|
— |
0.478
|
0.773
|
-0.268
|
— | — | — | — | — |
No JSON data available for plots.