Hg_chrom1_TN10mRNA_1583
Organism: Heterodera glycines Gene Locus: chr1:14800804-14802193 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 0.861 | 1.01 | 1.022 | 0.802 | 0.76 | 0.661 | 1.111 | 0.741 | 1.301 | 0.617 | 1.525 | 2.058 | 0.926 | 1.814 | 1.323 | 0.971 | 1.066 | 0.285 | 0.763 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1518
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
50-70
|
0.991
|
4-65
|
0.983
|
— | — |
0.001
|
— | — |
0.118
|
0.812
|
0.306
|
0.267
|
0.053
|
0.037
|
0.024
|
0.005
|
0.038
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006215
|
1.000
|
1.000
|
Hsc_gene_12633.t1
|
Hsc_gene_12633.t1
|
— |
A6QPU5.1 Aspartate--tRNA ligase, mitochondrial [Bos taurus]
|
KAF7633240.1 Aspartyl-tRNA synthetase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0005524|GO:0006418
|
GO:0005575_0.849|GO:0110165_0.844|GO:0005622_0.774|GO:0005737_0.704|GO:0008150_0.645|GO:0016020_0.623|GO:0043226_0.585|GO:0003674_0.558|GO:0043227_0.546|GO:0043229_0.545|GO:0009987_0.542|GO:0043231_0.511
|
IPR002312+215-227_232-245+|IPR004364+142-250+|IPR012340+27-133_32-135+|IPR045864+138-252_139-250+|IPR047089+35-159+
|
— |
PF00152+142-250+tRNA_synthetases_class_II_(D,_K_and_N)
|
— |
PTHR22594+30-250+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-270
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
30551.000
|
8.858
|
10.000
|
25.556
|
12.593
|
47.407
|
52.593
|
15.185
|
10.370
|
51.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
223.463
|
552.378
|
317.669
|
292.242
|
243.344
|
208.107
|
419.300
|
218.370
|
152.434
|
19.047
|
76.213
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.028
|
-1.056
|
— |
-0.295
|
— |
1.021
|
— |
1.085
|
— | — |
5.048
|
— | — |
No JSON data available for plots.