Hg_chrom1_TN10mRNA_1584
Organism: Heterodera glycines Gene Locus: chr1:14802220-14804270 Feature type: polypeptideProtein Sequence
Length: 189
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.107 | 0.577 | 0.912 | 1.323 | 0.95 | 0.819 | 1.852 | 1.411 | 1.645 | 1.042 | 1.556 | 1.47 | 1.323 | 0.864 | 1.058 | 0.52 | 0.641 | 0.407 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1519
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.502
|
0.791
|
0.063
|
0.478
|
0.141
|
0.039
|
0.037
|
0.075
|
0.027
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006216
|
1.000
|
1.000
|
Hsc_gene_12634.t1
|
Hsc_gene_12634.t1
|
— |
Q55C99.1 Aspartate--tRNA ligase, mitochondrial [Dictyostelium discoideum]
|
KAF7633240.1 Aspartyl-tRNA synthetase [Meloidogyne graminicola]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0005524|GO:0006418
|
GO:0005575_0.850|GO:0110165_0.847|GO:0005622_0.797|GO:0005737_0.763|GO:0016020_0.614|GO:0043226_0.588|GO:0008150_0.580|GO:0043227_0.570|GO:0043229_0.554|GO:0043231_0.527
|
IPR004364+31-157+|IPR006195+1-155+|IPR045864+23-189_43-182+
|
— |
PF00152+31-157+tRNA_synthetases_class_II_(D,_K_and_N)
|
— |
PTHR22594+37-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
156-189
|
1.000
|
1-155
|
1c0a_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
21129.470
|
7.390
|
3.500
|
25.926
|
11.111
|
44.974
|
55.026
|
14.815
|
11.111
|
44.974
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
544.585
|
615.675
|
363.177
|
352.559
|
316.270
|
246.535
|
437.581
|
288.611
|
406.916
|
1094.720
|
799.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.992
|
-0.942
|
— |
-0.190
|
-0.344
|
0.838
|
— |
0.744
|
— | — | — | — | — |
No JSON data available for plots.