Hg_chrom1_TN10mRNA_1585
Organism: Heterodera glycines Gene Locus: chr1:14804328-14805078 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 0.784 | 1.736 | 0.581 | 1.124 | 0.432 | 0.669 | 1.685 | 0.624 | 1.063 | 0.681 | 2.644 | 1.873 | 0.972 | 1.261 | 0.803 | 0.553 | 1.277 | 0.864 | 1.818 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1520
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.630
|
0.185
|
0.039
|
0.530
|
0.146
|
0.217
|
0.115
|
0.069
|
0.169
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006217
|
1.000
|
1.000
|
Hsc_gene_12635.t1
|
Hsc_gene_12635.t1
|
— |
Q6P632.1 N-alpha-acetyltransferase 20 [Xenopus tropicalis]
|
KAI3422027.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016747
|
GO:0005575_0.779|GO:0110165_0.774|GO:0005622_0.715|GO:0005737_0.711|GO:0008150_0.706|GO:0003674_0.624|GO:0016020_0.541|GO:0003824_0.527|GO:0043226_0.507|GO:0043229_0.502
|
IPR000182+2-155_32-126+|IPR016181+4-154+|IPR051646+1-173+
|
— |
PF00583+32-126+Acetyltransferase_(GNAT)_family
|
G3DSA:3.40.630.30:FF:000065+2-171+N-terminal_acetyltransferase_complex_ARD1_subunit_homolog
|
PTHR45910+1-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-178
|
8g0l_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
20721.450
|
4.780
|
-7.000
|
30.337
|
17.416
|
44.382
|
55.618
|
14.045
|
16.292
|
48.315
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
850.717
|
1175.951
|
896.373
|
962.058
|
949.929
|
889.972
|
606.835
|
1028.519
|
516.324
|
893.528
|
731.869
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.621
|
-0.427
|
0.211
|
— | — |
-0.542
|
— |
-0.619
|
— | — | — | — | — |
No JSON data available for plots.