Hg_chrom1_TN10mRNA_1586
Organism: Heterodera glycines Gene Locus: chr1:14805826-14807596 Feature type: polypeptideProtein Sequence
Length: 338
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.757 | 1.238 | 1.345 | 0.816 | 0.592 | 0.759 | 0.704 | 0.888 | 1.841 | 1.079 | 0.628 | 0.522 | 2.055 | 1.365 | 1.389 | 1.099 | 0.582 | 1.255 | 0.455 | 0.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1521
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.336
|
0.205
|
0.026
|
0.602
|
0.099
|
0.436
|
0.124
|
0.025
|
0.388
|
0.332
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006218
|
1.000
|
1.000
|
Hsc_gene_12636.t1
|
Hsc_gene_12636.t1
|
— |
P56470.1 Galectin-4 [Homo sapiens]
|
KAI1720841.1 galactoside-binding lectin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.778|GO:0110165_0.772|GO:0008150_0.723|GO:0009987_0.637|GO:0005622_0.529|GO:0016020_0.524|GO:0003674_0.521
|
IPR001079+16-163_17-161_18-163_22-162_195-334_196-326_198-334_202-333_204-330+|IPR013320+15-164_194-333+|IPR044156+193-329+
|
SM00276+16-163_195-334+|SM00908+22-162_202-333+
|
PF00337+17-161_204-330+Galactoside-binding_lectin
|
— |
PTHR11346+193-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
37588.140
|
7.289
|
3.000
|
23.669
|
11.243
|
43.195
|
56.805
|
12.722
|
10.947
|
54.142
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
1404.789
|
1516.812
|
1364.050
|
1050.635
|
1034.958
|
985.961
|
1665.047
|
1730.678
|
555.658
|
2223.655
|
1508.799
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.384
|
-0.667
|
-0.268
|
— | — |
0.766
|
0.709
|
— |
-2.126
|
— | — | — | — |
No JSON data available for plots.