Hg_chrom1_TN10mRNA_1587
Organism: Heterodera glycines Gene Locus: chr1:14807608-14809494 Feature type: polypeptideProtein Sequence
Length: 371
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 0.501 | 0.686 | 1.673 | 1.168 | 0.898 | 1.284 | 1.078 | 1.078 | 0.911 | 1.184 | 1.11 | 1.647 | 0.778 | 0.715 | 0.732 | 1.06 | 1.307 | 1.037 | 0.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1522
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.238
|
0.233
|
0.034
|
0.785
|
0.135
|
0.217
|
0.122
|
0.108
|
0.038
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006219
|
1.000
|
1.000
|
Hsc_gene_12637.t1
|
Hsc_gene_12637.t1
|
— |
Q17335.1 Alcohol dehydrogenase class-3 [Caenorhabditis elegans]
|
KAI1719381.1 alcohol dehydrogenase groES-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270|GO:0016491|GO:0046294|GO:0051903
|
GO:0008150_0.810|GO:0003674_0.759|GO:0005575_0.684|GO:0110165_0.674|GO:0003824_0.654|GO:0008152_0.595|GO:0016491_0.557|GO:0016020_0.545|GO:0009987_0.522
|
IPR002328+67-81+|IPR011032+3-178_320-369+|IPR013149+198-326+|IPR013154+33-120+|IPR014183+7-369_8-370+|IPR036291+164-336+
|
— |
PF00107+198-326+Zinc-binding_dehydrogenase|PF08240+33-120+Alcohol_dehydrogenase_GroES-like_domain
|
G3DSA:3.40.50.720:FF:000003+174-314+S-(hydroxymethyl)glutathione_dehydrogenase|G3DSA:3.90.180.10:FF:000067+17-173+alcohol_dehydrogenase_1-like_isoform_X1
|
PTHR43880+5-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-371
|
3qj5_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
39975.180
|
7.600
|
6.000
|
24.259
|
10.243
|
41.509
|
58.491
|
13.477
|
10.782
|
54.447
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1195.221
|
829.298
|
1038.720
|
1138.764
|
1861.254
|
1713.736
|
1844.752
|
1022.851
|
385.024
|
1396.809
|
963.187
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.320
|
0.241
|
0.677
|
— | — |
-0.850
|
0.995
|
— | — | — | — | — |
No JSON data available for plots.