Hg_chrom1_TN10mRNA_1595
Organism: Heterodera glycines Gene Locus: chr1:14837339-14838103 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.579 | 0.81 | 1.538 | 0.686 | 1.575 | 0.383 | 1.125 | 1.244 | 1.548 | 0.941 | 1.206 | 0.585 | 1.52 | 0.765 | 0.812 | 0.64 | 1.06 | 1.131 | 1.914 | 0.293 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1530
|
— | — |
1.556
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.789
|
0.455
|
0.028
|
0.311
|
0.291
|
0.172
|
0.095
|
0.067
|
0.078
|
0.215
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000762
|
5.000
|
1.000
|
Hsc_gene_4704.t2
|
Hsc_gene_14869.t1;Hsc_gene_15945.t1;Hsc_gene_22209.t1;Hsc_gene_22209.t2;Hsc_gene_22209.t3;Hsc_gene_24808.t1;Hsc_gene_25796.t1;Hsc_gene_4704.t1;Hsc_gene_4704.t2;Hsc_gene_8873.t1
|
— | — |
KAF7624768.1 DDE-1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
— |
IPR004875+1-125+
|
— |
PF03184+1-125+DDE_superfamily_endonuclease
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
22473.360
|
4.631
|
-9.500
|
32.338
|
11.443
|
48.259
|
51.741
|
14.428
|
17.910
|
50.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
20.980
|
1.541
|
3.693
|
3.863
|
3.879
|
1.779
|
1.627
|
2.762
|
99.306
|
10.129
|
48.347
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.