Hg_chrom1_TN10mRNA_1597
Organism: Heterodera glycines Gene Locus: chr1:14841514-14842710 Feature type: polypeptideProtein Sequence
Length: 280
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 1.08 | 0.714 | 0.862 | 1.369 | 0.641 | 0.595 | 0.893 | 1.111 | 1.448 | 0.595 | 1.05 | 2.083 | 1.03 | 1.895 | 1.173 | 0.82 | 0.703 | 0.824 | 0.105 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1532
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRENFNRNRPRLLKRNEK
|
3-40
|
0.973
|
8-48
|
1.000
|
— | — |
0.050
|
— | — |
0.085
|
0.898
|
0.272
|
0.213
|
0.025
|
0.034
|
0.063
|
0.017
|
0.061
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006222
|
1.000
|
1.000
|
Hsc_gene_12641.t1
|
Hsc_gene_12641.t1
|
— |
Q9CR24.1 Mitochondrial coenzyme A diphosphatase NUDT8 [Mus musculus]
|
KAI3422021.1 Nudix hydrolase 3 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010945|GO:0016787
|
GO:0005575_0.737|GO:0008150_0.734|GO:0110165_0.732|GO:0003674_0.718|GO:0009987_0.674|GO:0005622_0.660|GO:0043226_0.605|GO:0016020_0.594|GO:0043229_0.587|GO:0005737_0.531|GO:0003824_0.523|GO:0008152_0.510|GO:0043227_0.509
|
IPR000086+67-208_88-191+|IPR015797+88-253+|IPR020084+111-132+|IPR020476+106-120_120-135+|IPR045121+60-261_71-252+
|
— |
PF00293+88-191+NUDIX_domain
|
— |
PTHR12992+60-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-280
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
31628.240
|
8.173
|
5.500
|
27.143
|
10.714
|
47.500
|
52.500
|
15.000
|
12.143
|
47.857
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellowgreen
|
354.282
|
196.888
|
335.361
|
327.161
|
357.872
|
326.879
|
350.148
|
382.252
|
455.628
|
354.553
|
397.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
0.595
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.