Hg_chrom1_TN10mRNA_1598
Organism: Heterodera glycines Gene Locus: chr1:14843008-14844725 Feature type: polypeptideProtein Sequence
Length: 376
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.68 | 1.361 | 0.58 | 0.183 | 3.236 | 0.955 | 1.52 | 0.133 | 0.532 | 0.683 | 1.249 | 2.816 | 0.591 | 0.409 | 2.388 | 0.418 | 0.872 | 0.403 | 0.409 | 0.156 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1533
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRESEEEEEKEEGMKRRGG,RMKGKEREEKERREGTEKEEEKEGANGKEERGERKEQFEDNKEAKNGKIGAKGGEEREAEKEPKKQRMRANGRA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.117
|
0.051
|
0.022
|
0.243
|
0.257
|
0.367
|
0.213
|
0.014
|
0.880
|
0.343
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003075
|
1.000
|
2.000
|
Hsc_gene_12642.t1;Hsc_gene_12642.t2
|
— | — | — |
KAI3422020.1 hypothetical protein GPALN_012557 [Globodera pallida]
|
No
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
77-376
|
1.000
|
1-76
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
42774.260
|
5.003
|
-9.500
|
42.819
|
3.457
|
60.638
|
39.362
|
20.213
|
22.606
|
41.223
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
turquoise
|
933.532
|
1299.096
|
67.513
|
937.479
|
1661.835
|
1381.279
|
280.132
|
230.425
|
22.867
|
1870.390
|
1078.595
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.502
|
-0.608
|
3.909
|
0.793
|
— |
-2.293
|
-2.699
|
— |
-6.535
|
5.577
|
— | — |
4.164
|
No JSON data available for plots.