Hg_chrom1_TN10mRNA_160
Organism: Heterodera glycines Gene Locus: chr1:1141141-1146731 Feature type: polypeptideProtein Sequence
Length: 1,161
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.691 | 1.482 | 0.924 | 1.426 | 1.22 | 0.905 | 0.81 | 1.206 | 1.378 | 0.931 | 1.188 | 0.963 | 1.507 | 1.01 | 0.879 | 0.812 | 0.932 | 0.757 | 1.06 | 0.912 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_155
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKKR,RRSDARNYLILRKKNG
|
— | — | — | — |
1-16
|
0.995
|
0.999
|
0.000
|
0.000
|
0.281
|
0.175
|
0.072
|
0.262
|
0.226
|
0.098
|
0.142
|
0.044
|
0.338
|
0.602
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000233
|
6.000
|
4.000
|
Hsc_gene_22581.t1;Hsc_gene_22632.t1;Hsc_gene_24320.t1;Hsc_gene_24321.t1
|
Hsc_gene_22582.t1
|
— |
Q93243.2 Zinc metalloproteinase nas-37 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.804|GO:0032501_0.593|GO:0005575_0.590|GO:0110165_0.588|GO:0003674_0.508
|
IPR000742+808-819+|IPR001506+585-784_593-784_681-699_700-717_731-746_770-783+|IPR006026+590-736+|IPR024079+539-786+
|
SM00235+590-736+
|
PF01400+593-784+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+564-897+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
131068.140
|
7.137
|
11.000
|
26.960
|
12.317
|
48.234
|
51.766
|
14.556
|
12.403
|
49.957
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
198.252
|
12.505
|
29.015
|
55.354
|
95.268
|
313.637
|
82.481
|
1006.083
|
1.028
|
268.703
|
153.985
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.983
|
2.007
|
1.045
|
0.753
|
1.733
|
-1.917
|
1.578
|
-3.466
|
-7.828
|
5.657
|
— | — | — |