SCN Proteipedia

Hg_chrom1_TN10mRNA_1600

Organism: Heterodera glycines Gene Locus: chr1:14847118-14851674 Feature type: polypeptide

Protein Sequence

Length: 1,010

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.748	1.013	0.864	0.751	1.056	1.32	0.636	1.832	1.078	1.338	0.825	1.34	1.265	1.009	1.152	1.16	0.99	0.87	0.838	0.844	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1535	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKRP,KKKAPPNNARVARRPRDLRG	—	—	—	—	—	—	0.000	—	—	0.265	0.233	0.028	0.607	0.182	0.348	0.305	0.043	0.324	0.028

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006224	1.000	1.000	Hsc_gene_12644.t1	Hsc_gene_12644.t1	—	Q8IVH8.1 Mitogen-activated protein kinase kinase kinase kinase 3 [Homo sapiens]	KAI3422018.1 Mitogen-activated protein kinase kinase kinase kinase 5 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468\|GO:0008349	GO:0008150_0.915\|GO:0009987_0.862\|GO:0065007_0.825\|GO:0050789_0.819\|GO:0005575_0.813\|GO:0110165_0.811\|GO:0050794_0.806\|GO:0003674_0.764\|GO:0050896_0.729\|GO:0005622_0.714\|GO:0051716_0.711\|GO:0003824_0.704\|GO:0140096_0.704\|GO:0007154_0.700\|GO:0023052_0.692\|GO:0016740_0.686\|GO:0007165_0.680\|GO:0004672_0.674\|GO:0016301_0.674\|GO:0016772_0.674\|GO:0016773_0.674\|GO:0035556_0.585\|GO:0005488_0.582\|GO:0016020_0.571\|GO:0004674_0.552\|GO:0008152_0.546\|GO:0019538_0.546\|GO:0043170_0.546\|GO:0044238_0.546\|GO:0036211_0.545\|GO:0043412_0.545\|GO:0005737_0.520\|GO:0006793_0.519\|GO:0006796_0.519\|GO:0044237_0.519\|GO:0006468_0.501\|GO:0016310_0.501	IPR000719+14-267_14-272+\|IPR001180+577-959_582-966_593-948+\|IPR011009+12-272+\|IPR017441+20-43+\|IPR021160+1-791_841-985+\|IPR050629+4-795+	SM00036+582-966+\|SM00220+14-272+	PF00069+14-267+Protein_kinase_domain\|PF00780+593-948+CNH_domain	G3DSA:1.10.510.10:FF:000031+10-314+Mitogen-activated_protein_kinase_kinase_kinase_kinase	PTHR48012+4-795+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	324-484	2.000	1-323;485-1010	5j5t_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.723	114118.940	7.567	18.500	25.842	12.178	49.505	50.495	14.752	11.089	48.218

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1980.189	2348.852	1712.590	1191.059	1242.591	1235.530	2984.195	1498.119	1102.469	3256.625	2333.416

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.686	-1.117	-0.415	—	—	1.283	—	1.136	—	—	—	—	—

No JSON data available for plots.

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