Hg_chrom1_TN10mRNA_1602
Organism: Heterodera glycines Gene Locus: chr1:14854253-14856983 Feature type: polypeptideProtein Sequence
Length: 562
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.641 | 1.614 | 1.003 | 0.245 | 1.394 | 1.369 | 0.805 | 0.623 | 0.633 | 1.058 | 0.998 | 1.361 | 1.285 | 0.924 | 1.053 | 1.627 | 1.021 | 0.809 | 0.684 | 0.471 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1537
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.811
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRMFQENKLAWRRVYK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.214
|
0.077
|
0.029
|
0.572
|
0.344
|
0.469
|
0.646
|
0.089
|
0.228
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003076
|
1.000
|
2.000
|
Hsc_gene_12646.t1;Hsc_gene_12646.t2
|
Hsc_gene_12646.t1;Hsc_gene_12646.t2
|
— |
Q14677.1 Clathrin interactor 1 [Homo sapiens]
|
KAI1719372.1 ENTH domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.870|GO:0110165_0.870|GO:0005622_0.806|GO:0016020_0.735|GO:0008150_0.711|GO:0005737_0.685|GO:0043226_0.678|GO:0043229_0.672|GO:0009987_0.628|GO:0071944_0.612|GO:0043227_0.590|GO:0003674_0.570|GO:0043231_0.563|GO:0005886_0.560|GO:0005488_0.511
|
IPR008942+81-227_85-237+|IPR013809+94-227_100-223_100-227+
|
SM00273+100-227+
|
PF01417+100-223+ENTH_domain
|
G3DSA:1.25.40.90:FF:000006+92-241+Clathrin_interactor_1
|
PTHR12276+83-547+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-56;230-562
|
1.000
|
57-229
|
1xgw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
62393.120
|
5.168
|
-8.500
|
26.868
|
8.363
|
56.762
|
43.238
|
12.989
|
13.879
|
53.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
3133.602
|
2667.999
|
3020.116
|
3374.719
|
3715.851
|
4163.705
|
2970.470
|
4312.905
|
3602.354
|
1923.081
|
2642.769
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.202
|
0.269
|
0.107
|
0.179
|
-0.476
|
— |
-0.395
|
— | — | — | — | — |
No JSON data available for plots.