Hg_chrom1_TN10mRNA_1607
Organism: Heterodera glycines Gene Locus: chr1:14866494-14869397 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.688 | 1.622 | 1.422 | 1.166 | 1.057 | 0.651 | 0.604 | 1.903 | 1.175 | 1.057 | 0.577 | 0.871 | 1.116 | 0.691 | 1.251 | 1.51 | 0.762 | 0.833 | 1.301 | 1.057 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1542
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.731
|
0.132
|
0.007
|
0.409
|
0.203
|
0.135
|
0.066
|
0.031
|
0.093
|
0.011
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006229
|
1.000
|
1.000
|
Hsc_gene_12650.t1
|
Hsc_gene_12650.t1
|
— |
Q80T85.2 DDB1- and CUL4-associated factor 5 [Mus musculus]
|
KAI1719360.1 DDB1- and CUL4-associated factor 5 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.855|GO:0110165_0.850|GO:0005622_0.813|GO:0043226_0.729|GO:0016020_0.716|GO:0043229_0.706|GO:0043227_0.672|GO:0043231_0.667|GO:0008150_0.654|GO:0009987_0.582
|
IPR001680+42-81_47-80_49-80_93-131_102-131_134-173_137-173_179-218_263-305_281-304_317-356_322-356_324-356+|IPR015943+30-180_181-422+|IPR036322+49-356+|IPR045151+41-447+
|
SM00320+42-81_93-131_134-173_179-218_263-305_317-356+
|
PF00400+47-80_102-131_137-173_281-304_322-356+WD_domain,_G-beta_repeat
|
— |
PTHR15574+41-447+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
445-473
|
1.000
|
1-444
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
53568.470
|
5.314
|
-11.000
|
27.907
|
13.108
|
52.643
|
47.357
|
13.742
|
14.165
|
53.488
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
1822.805
|
784.150
|
1055.272
|
827.887
|
871.248
|
1072.946
|
1561.183
|
1076.934
|
2011.564
|
3747.490
|
3003.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.199
|
— |
-0.241
|
— |
0.315
|
0.552
|
— |
0.680
|
— | — | — | — | — |
No JSON data available for plots.