SCN Proteipedia

Hg_chrom1_TN10mRNA_1608

Organism: Heterodera glycines Gene Locus: chr1:14870124-14875339 Feature type: polypeptide

Protein Sequence

Length: 1,181

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.994	0.926	0.908	0.35	1.157	1.172	0.887	1.185	1.261	1.041	0.872	1.893	1.364	1.042	1.21	0.798	0.666	1.373	0.195	0.747	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1543	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-Not_Clustered	0.795

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	1-21	0.995	11-33	0.990	—	—	0.000	—	—	0.135	0.907	0.015	0.228	0.049	0.063	0.040	0.011	0.051	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006230	1.000	1.000	Hsc_gene_12651.t1	Hsc_gene_12651.t1	—	O17732.1 Pyruvate carboxylase 1 [Caenorhabditis elegans]	KAI3422009.1 pyruvate carboxylase [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0004736\|GO:0005524\|GO:0006090\|GO:0006094\|GO:0046872	GO:0005575_0.746\|GO:0110165_0.746\|GO:0003674_0.709\|GO:0008150_0.680\|GO:0005622_0.662\|GO:0005737_0.618\|GO:0003824_0.564\|GO:0008152_0.553\|GO:0016020_0.524	IPR000089+1105-1180_1114-1178+\|IPR000891+565-834_694-835+\|IPR003379+863-1062+\|IPR005479+150-358_321-328+\|IPR005481+36-145+\|IPR005482+374-481_374-482+\|IPR005930+29-1180_31-1181_38-1180+\|IPR011053+1102-1180+\|IPR011054+369-487+\|IPR011761+155-352+\|IPR011764+35-485+\|IPR013785+515-1039+\|IPR016185+27-148+	SM00878+374-481+	PF00289+36-145+Biotin_carboxylase,_N-terminal_domain\|PF00364+1114-1178+Biotin-requiring_enzyme\|PF00682+694-835+HMGL-like\|PF02436+863-1062+Conserved_carboxylase_domain\|PF02785+374-482+Biotin_carboxylase_C-terminal_domain\|PF02786+150-358+Carbamoyl-phosphate_synthase_L_chain,_ATP_binding_domain	G3DSA:2.40.50.100:FF:000003+1105-1180+Acetyl-CoA_carboxylase_biotin_carboxyl_carrier_protein\|G3DSA:3.20.20.70:FF:000033+518-1039+Pyruvate_carboxylase\|G3DSA:3.30.470.20:FF:000012+27-489+Pyruvate_carboxylase	PTHR43778+29-1180+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1178-1181	1.000	1-1177	8xl9_D	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.687	130881.290	7.274	11.000	25.995	10.076	44.200	55.800	14.056	11.939	50.127

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	brown	5372.963	1966.153	4301.638	3208.959	23203.538	10271.792	9040.844	2361.004	3082.293	812.269	1785.137

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.902	0.570	-0.315	2.822	-1.162	-0.173	-2.231	2.082	—	—	4.952	—	—

No JSON data available for plots.

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