Hg_chrom1_TN10mRNA_1609
Organism: Heterodera glycines Gene Locus: chr1:14875426-14877767 Feature type: polypeptideProtein Sequence
Length: 516
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.172 | 0.856 | 1.268 | 0.535 | 0.904 | 0.547 | 0.831 | 1.357 | 1.163 | 1.179 | 0.969 | 1.938 | 0.969 | 0.857 | 1.068 | 1.163 | 0.731 | 1.204 | 0.149 | 0.855 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1544
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.412
|
0.427
|
0.163
|
0.686
|
0.330
|
0.145
|
0.183
|
0.096
|
0.134
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006231
|
1.000
|
1.000
|
Hsc_gene_12652.t1
|
Hsc_gene_12652.t1
|
— |
Q27245.1 Putative aminopeptidase W07G4.4 [Caenorhabditis elegans]
|
KAI3422008.1 Cytosol aminopeptidase, catalytic domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0006508|GO:0019538|GO:0030145|GO:0046872|GO:0070006
|
GO:0003674_0.700|GO:0008150_0.649|GO:0005575_0.632|GO:0110165_0.630|GO:0005622_0.526
|
IPR000819+179-491_345-352+|IPR011356+39-491_259-276_281-302_319-340_341-361_373-388+
|
— |
PF00883+179-491+Cytosol_aminopeptidase_family,_catalytic_domain
|
— |
PTHR11963+39-491+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
56237.310
|
6.855
|
3.000
|
26.744
|
9.302
|
45.155
|
54.845
|
14.341
|
12.403
|
54.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2415.870
|
2011.587
|
1980.788
|
3197.984
|
3674.663
|
3161.843
|
4699.278
|
2534.942
|
1940.753
|
1140.962
|
1483.730
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.251
|
0.532
|
0.799
|
0.169
|
-0.202
|
0.583
|
-0.424
|
1.033
|
— | — |
1.850
|
— | — |
No JSON data available for plots.