Hg_chrom1_TN10mRNA_161
Organism: Heterodera glycines Gene Locus: chr1:1148252-1157144 Feature type: polypeptideProtein Sequence
Length: 1,159
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.642 | 1.324 | 0.816 | 1.488 | 1.294 | 1.062 | 0.729 | 1.424 | 1.496 | 1.003 | 1.255 | 1.015 | 1.438 | 0.929 | 0.652 | 0.924 | 0.934 | 0.797 | 0.73 | 0.99 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_156
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKRCGLEPENLISRRRKRQ,KRCGLEPENLISRRRKRQF
|
— | — | — | — |
1-17
|
0.997
|
1.000
|
0.000
|
0.000
|
0.293
|
0.192
|
0.055
|
0.231
|
0.248
|
0.120
|
0.169
|
0.054
|
0.263
|
0.602
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000276
|
7.000
|
2.000
|
Hsc_gene_1689.t1;Hsc_gene_22556.t1
|
Hsc_gene_22548.t1;Hsc_gene_22578.t2;Hsc_gene_22582.t1
|
— |
Q18206.2 Zinc metalloproteinase nas-36 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.788|GO:0005575_0.608|GO:0110165_0.608|GO:0032501_0.600
|
IPR000742+830-841+|IPR001506+581-806_621-806_627-645_703-721_722-739_753-768_792-805+|IPR006026+598-758+|IPR024079+558-808+
|
SM00235+598-758+
|
PF01400+621-806+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+567-896+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1159
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
130784.340
|
6.855
|
7.500
|
26.575
|
12.338
|
48.576
|
51.424
|
14.323
|
12.252
|
48.404
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
229.842
|
8.920
|
8.166
|
7.034
|
66.257
|
134.066
|
27.292
|
230.925
|
1.382
|
823.526
|
471.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
3.205
|
1.030
|
-2.286
|
0.677
|
-2.936
|
-9.495
|
— |
-3.453
|
— | — |