Hg_chrom1_TN10mRNA_1610
Organism: Heterodera glycines Gene Locus: chr1:14877978-14881242 Feature type: polypeptideProtein Sequence
Length: 476
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.684 | 0.733 | 1.222 | 0.435 | 1.296 | 0.862 | 0.65 | 1.366 | 1.12 | 1.476 | 1.178 | 1.854 | 1.459 | 0.687 | 1.372 | 1.17 | 0.62 | 0.668 | 1.778 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1545
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.388
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — |
13-35
|
0.963
|
— | — | — | — |
0.000
|
— | — |
0.172
|
0.706
|
0.132
|
0.560
|
0.052
|
0.087
|
0.109
|
0.145
|
0.079
|
0.182
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006232
|
1.000
|
1.000
|
Hsc_gene_12653.t1
|
Hsc_gene_12653.t1;Hsc_gene_12653.t2
|
— |
Q9H993.1 Damage-control phosphatase ARMT1 [Homo sapiens]
|
KAI1720810.1 protein-glutamate O-methyltransferase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.863|GO:0008150_0.823|GO:0003824_0.759|GO:0005575_0.695|GO:0110165_0.693|GO:0005488_0.669|GO:0005622_0.654|GO:0016020_0.610|GO:0043226_0.579|GO:0005737_0.575|GO:0043229_0.566|GO:0043227_0.545|GO:0043231_0.515
|
IPR002791+52-440+|IPR036075+123-439+|IPR039763+27-472+
|
— |
PF01937+52-440+Damage-control_phosphatase_ARMT1-like_domain
|
G3DSA:3.40.50.10880:FF:000005+264-436+DUF89-domain-containing_protein
|
PTHR12260+27-472+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-476
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
55058.020
|
7.526
|
6.500
|
31.723
|
12.815
|
50.210
|
49.790
|
17.227
|
14.496
|
42.437
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1713.028
|
1253.897
|
912.598
|
1593.316
|
2994.367
|
1883.944
|
2240.480
|
1384.294
|
1418.811
|
1831.802
|
1654.806
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.689
|
0.208
|
0.913
|
0.878
|
-0.654
|
0.261
|
-0.551
|
0.838
|
— | — | — | — | — |
No JSON data available for plots.