Hg_chrom1_TN10mRNA_1614
Organism: Heterodera glycines Gene Locus: chr1:14889174-14889916 Feature type: polypeptideProtein Sequence
Length: 131
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 0.71 | 0.833 | 0.263 | 1.145 | 1.37 | 0.636 | 0.0 | 0.848 | 1.135 | 1.041 | 1.347 | 1.272 | 1.468 | 2.181 | 0.981 | 0.751 | 0.81 | 1.762 | 1.123 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1549
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKSMQKRWDKRDGRR,RKISRNKLYGRKSMQKRWDKRDG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.792
|
0.357
|
0.090
|
0.412
|
0.081
|
0.072
|
0.126
|
0.006
|
0.065
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006236
|
1.000
|
1.000
|
Hsc_gene_12657.t1
|
Hsc_gene_12657.t1
|
— | — |
KAI3422003.1 hypothetical protein GPALN_012540 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54
|
1.000
|
55-131
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
15223.460
|
10.401
|
8.000
|
29.008
|
10.687
|
48.855
|
51.145
|
17.557
|
11.450
|
45.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
215.362
|
97.497
|
158.908
|
257.045
|
476.877
|
369.329
|
630.217
|
172.008
|
5.654
|
127.261
|
75.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.474
|
1.261
|
0.803
|
0.861
|
-0.354
|
0.781
|
-1.218
|
2.020
|
— |
5.676
|
— | — | — |
No JSON data available for plots.