Hg_chrom1_TN10mRNA_1617
Organism: Heterodera glycines Gene Locus: chr1:14896345-14897152 Feature type: polypeptideProtein Sequence
Length: 178
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.588 | 1.568 | 0.715 | 0.775 | 1.124 | 1.008 | 0.401 | 0.562 | 1.748 | 0.759 | 1.107 | 0.991 | 2.185 | 1.513 | 2.408 | 0.803 | 0.737 | 0.426 | 1.296 | 0.661 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1552
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PPYKRKW
|
6-26
|
0.934
|
33-53
|
0.978
|
— | — |
0.000
|
— | — |
0.849
|
0.191
|
0.061
|
0.328
|
0.029
|
0.012
|
0.010
|
0.021
|
0.041
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006238
|
1.000
|
1.000
|
Hsc_gene_12662.t2
|
Hsc_gene_12662.t1;Hsc_gene_12662.t2
|
— |
Q8WUU5.1 GATA zinc finger domain-containing protein 1 [Homo sapiens]
|
KAI3422000.1 GATA zinc finger domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.888|GO:0110165_0.877|GO:0005622_0.844|GO:0043226_0.803|GO:0016020_0.798|GO:0043229_0.798|GO:0043227_0.764|GO:0043231_0.755|GO:0005634_0.654|GO:0008150_0.583|GO:0009987_0.519|GO:0005737_0.506
|
IPR039050+12-164+
|
— | — | — |
PTHR13340+12-164+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
177-178
|
1.000
|
1-176
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
21170.380
|
10.777
|
16.000
|
30.899
|
12.921
|
51.685
|
48.315
|
20.225
|
10.674
|
42.135
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellow
|
988.724
|
539.818
|
656.909
|
623.921
|
619.265
|
601.362
|
749.199
|
852.918
|
1177.987
|
1700.905
|
1476.797
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.327
|
0.398
|
— | — | — | — | — | — |
No JSON data available for plots.