Hg_chrom1_TN10mRNA_162
Organism: Heterodera glycines Gene Locus: chr1:1164263-1167856 Feature type: polypeptideProtein Sequence
Length: 648
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 1.579 | 0.926 | 0.479 | 1.26 | 1.266 | 0.735 | 1.389 | 1.543 | 0.938 | 1.45 | 1.362 | 1.072 | 0.831 | 0.945 | 0.772 | 1.088 | 0.818 | 0.831 | 0.499 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_157
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
cytoplasm
|
nucleus
|
KVKK,RRRRRRKRRNA
|
— | — | — | — |
1-18
|
0.997
|
1.000
|
0.000
|
0.000
|
0.270
|
0.151
|
0.008
|
0.464
|
0.276
|
0.174
|
0.210
|
0.024
|
0.318
|
0.212
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000141
|
1.000
|
12.000
|
Hsc_gene_20358.t1;Hsc_gene_20359.t1;Hsc_gene_20360.t1;Hsc_gene_20360.t2;Hsc_gene_20364.t1;Hsc_gene_20538.t1;Hsc_gene_20539.t1;Hsc_gene_21668.t1;Hsc_gene_22555.t1;Hsc_gene_25766.t1;Hsc_gene_9625.t1;Hsc_gene_9626.t1
|
— | — | — |
KAA3478966.1 E3 ubiquitin-protein ligase ATL41-like [Gossypium australe]
|
XP_061966230
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.824|GO:0005575_0.721|GO:0110165_0.704|GO:0003674_0.676|GO:0009987_0.653|GO:0016020_0.578|GO:0005622_0.572|GO:0008152_0.508|GO:0044238_0.507|GO:0003824_0.505|GO:0043226_0.505
|
IPR001841+402-446_404-445_404-446+|IPR013083+379-455+
|
SM00184+404-445+
|
PF13639+402-446+Ring_finger_domain
|
— |
PTHR46539+328-458+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
228-329;455-588
|
3.000
|
1-227;330-454;589-648
|
5zc4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
73074.190
|
9.058
|
19.000
|
29.630
|
9.414
|
53.395
|
46.605
|
16.975
|
12.654
|
47.685
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
667.011
|
3.212
|
420.018
|
384.061
|
37.360
|
1.738
|
5.872
|
16.390
|
3240.136
|
162.325
|
1481.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.803
|
6.764
|
— |
-3.399
|
-4.401
|
1.760
|
3.143
|
-1.347
|
4.245
|
-2.889
|
— |
3.207
|
— |