Hg_chrom1_TN10mRNA_1621
Organism: Heterodera glycines Gene Locus: chr1:14904814-14906279 Feature type: polypeptideProtein Sequence
Length: 234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.497 | 0.596 | 1.01 | 0.589 | 1.353 | 1.534 | 0.611 | 0.641 | 1.14 | 0.809 | 0.971 | 1.508 | 2.018 | 0.74 | 1.832 | 0.977 | 0.841 | 0.583 | 0.986 | 2.388 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1557
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.963
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRGKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.519
|
0.190
|
0.003
|
0.828
|
0.174
|
0.084
|
0.097
|
0.006
|
0.126
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001082
|
3.000
|
2.000
|
Hsc_gene_12666.t1;Hsc_gene_12667.t1
|
Hsc_gene_12666.t1;Hsc_gene_12667.t1
|
— |
O44628.2 M-phase inducer phosphatase cdc-25.2 [Caenorhabditis elegans]
|
KAF7638475.1 Rhodanese domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004725|GO:0006470|GO:1902751
|
GO:0008150_0.791|GO:0005575_0.767|GO:0110165_0.762|GO:0009987_0.728|GO:0005622_0.714|GO:0043226_0.679|GO:0016020_0.662|GO:0043229_0.660|GO:0043227_0.634|GO:0043231_0.622|GO:0065007_0.532|GO:0071840_0.530|GO:0005634_0.526|GO:0016043_0.523|GO:0050789_0.510|GO:0050794_0.503|GO:0003674_0.502
|
IPR000751+73-93_138-158_170-191+|IPR001763+80-196_90-194_91-190+|IPR036873+49-230_64-217+
|
SM00450+80-196+
|
PF00581+91-190+Rhodanese-like_domain
|
G3DSA:3.40.250.10:FF:000021+51-230+M-phase_inducer_phosphatase_cdc-25.2
|
PTHR10828+20-227+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
225-234
|
1.000
|
1-224
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
28130.790
|
8.647
|
5.500
|
30.342
|
17.949
|
50.855
|
49.145
|
16.667
|
13.675
|
38.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
— |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.